F22033

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22033

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22033

Determination of introduced cDNA(s)

  • RAFL05-07-D14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-D14 - Resource: pda01119

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-D14 - full reading 
    ACCATATACC CACACTCACA AGTCACAACT CAAATAATCT TTGTCTTCCT 
    CCTACAAATA TGGGGTTTTC TCCTTCATTT TCTTGCAGTG CTATTGGAGC 
    CCTAATTTTG GGTTGCCTTC TGCTTCAAGC ATCAAACTCT AATGCTCAGT 
    TGAGGCCTGA TTTCTACTTC GGGACGTGCC CATTTGTTTT TGATATCATT 
    GGAAATATCA TCGTCGATGA ACTGCAGACT GATCCTCGTA TTGCCGCGAG 
    CCTCCTTCGT CTTCACTTTC ACGACTGCTT TGTTCGTGGT TGTGATGCAT 
    CGATCTTGCT TGACAATTCC ACATCATTCC GGACTGAGAA AGATGCTGCT 
    CCGAACGCAA ATTCGGCTCG AGGGTTTAAT GTCATAGATA GAATGAAAGT 
    AGCCCTTGAG AGAGCTTGCC CAGGAAGAGT CTCTTGTGCA GATATTCTCA 
    CCATCGCCTC TCAAATATCA GTGCTTTTGT CGGGAGGTCC ATGGTGGCCG 
    GTTCCGTTGG GGAGGAGAGA CAGTGTAGAA GCTTTCTTCG CTCTGGCTAA 
    TACAGCTCTG CCCTCTCCGT TTTTCAATCT TACTCAACTT AAAACAGCCT 
    TTGCTGACGT TGGCCTAAAC CGCACTTCCG ATCTAGTTGC TCTTTCCGGT 
    GGTCACACAT TTGGAAGAGC ACAATGCCAG TTCGTGACGC CTCGTCTCTA 
    CAACTTCAAT GGTACAAACA GTCCAGACCC AAGTCTGAAC CCAACTTACC 
    TTGTCGAACT CCGTCGATTG TGTCCTCAAA ACGGAAACGG CACCGTTCTG 
    GTCAACTTCG ATGTCGTGAC TCCAGATGCT TTCGATAGTC AATACTACAC 
    CAACCTTCGT AATGGGAAAG GTCTTATTCA GAGTGACCAG GAACTCTTTT 
    CGACTCCAGG AGCCGATACG ATCCCTTTAG TAAACCAATA CAGCAGCGAC 
    ATGTCCGTGT TCTTTCGAGC ATTCATTGAC GCAATGATTA GGATGGGAAA 
    TCTTAGACCT TTGACTGGAA CTCAAGGAGA GATTAGACAA AATTGTAGGG 
    TTGTGAATCC ACGAATTAGG GTTGTGGAGA ACGACGATGG TGTTGTGAGT 
    TCTATCTGAT TATGCATGTT GCCATGTTGG GGATATATAT ATGGATATGT 
    AAGAAAGTAT AAAATGCGCA CGTGAGAACA ATTTCGACTA ATAAAAGTTT 
    TCACGAGTTA TGAGATTTAT GAAATTGGTA TCAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT2G38380.1 [+] show detail - Peroxidase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Haem peroxidase, plant/fungal/bacterial 7.4e-69
    Gene3D no description 2.2e-59
    PatternScan Peroxidases heam-ligand binding site 0
    PatternScan Peroxidase, active site 0
    FPrintScan Plant peroxidase 7.7e-67
    FPrintScan Plant peroxidase 7.7e-67
    FPrintScan Plant peroxidase 7.7e-67
    FPrintScan Plant peroxidase 7.7e-67
    FPrintScan Plant peroxidase 7.7e-67
    FPrintScan Plant peroxidase 7.7e-67
    FPrintScan Plant peroxidase 7.7e-67
    FPrintScan Plant peroxidase 7.7e-67
    FPrintScan Plant peroxidase 7.7e-67
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
    FPrintScan Haem peroxidase, plant/fungal/bacterial 1.1e-33
    ProfileScan Haem peroxidase, plant/fungal/bacterial 80.697
    superfamily Haem peroxidase 1.9e-115

    See the detailed result >

    AT2G38380.1

    Model type
    Protein coding
    Short Description
    Peroxidase superfamily protein
    Computational Description
    Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to zinc ion, response to salt stress; LOCATED IN: plant-type cell wall; EXPRESSED IN: stem, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G38390.1); Has 4386 Blast hits to 4361 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 86; Plants - 4250; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR