F22151

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22151

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22151

Determination of introduced cDNA(s)

  • RAFL04-17-H15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-17-H15 - Resource: pda00628

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-17-H15 - full reading 
    ATACAATGCT ACGATCCACT TGCTGCACTC CACTTTGCCC TTTCACGGCG 
    AAACAACCTT CTTTCCTTAG GAAACAGCAA CGTATTACCT CTGATCGCTT 
    CACCTTTCGC GGTGGTGGTG GTGGCGATGC CGCCGCCGTC GTCTCCTCCT 
    CCGGCCTCCG TGATCTCGTT TTCGTCGTAA ACCCTCAAGG TGCTAATGGT 
    AGAACAGCTA AAGAATGGAA GAAGTTGCTT CCTCACCTTC GATCTCGTCT 
    TGGTAAAGAC TGTAATGTAA GTGAATTATT AACATCGGGT CCTTCTCATG 
    CCATTGACAT TACAAGAGAG GCTATAAGGG ATGGTGCAGA TGCTGTCATT 
    GCGGTTGGAG GTGATGGAAC ACTTCATGAG GTTGTTAATG GTTTCTTTTG 
    GGAGGGGAAA CCTGTCGGTT ATCTCAGTGG GGAAGCTAGT CGATCGACTG 
    CACTTGGTCT GATTCCCTTA GGTACTGGCT CAGATTTTGC TAGAACATTT 
    GGTTGGAACA ATGATCCTTG TGAAGCAGTG GAGCGCATTG CTAGAGGGAT 
    GCGATCACGG ATTGATGTTG GTGTTATCGA CAAGGAAGGA AAGGATTTGC 
    ATTACTTCAT CAATGTAGCT GATGTTCATT TGAGCGCAGG CAGGATTTTA 
    CGCTTCAAAA TACAAGAAAT TTGGAAACTT GTGCTACGTA ATTGGTGCCC 
    TACAAGCGTT CATGGGCCAT CATAACCAAG ATATGAGAAT CAGAGTCAAT 
    GGAGGCGAAT GGGAAATATA TCCCCAGGTC ACTGCTCTCT GCGTTGGAAA 
    CGCAAAATAC TTTGGTGGTG GAATGAAAAT CACACCCAAC GCCATCCCTG 
    GAAATGGAAA TCTTGAGGTT GTGGTTCTTC AAAACTTCAA ATGGTATGAT 
    TTCGTACTTA AACTTCATAA GCTGTACAAC GGGACTCATC TTTCGGTTAA 
    CAATGTGACT TCAAGAAGTG TACAAAGCAT CGAAGTTGAA GAGATTACAG 
    ACAGTGGAAG TATCTATGTG CAGTCAGATG GAGAACATCT TGGATTCCTA 
    CCTAGAAAGT TTCAGGTGTT ACCCGGTGCC ATAGACATAA TCAGCTGATC 
    AAAACCGCAG ATTTCTTAGG ATAAACTTGT CAAGTAAAGT GTAGAATACT 
    TCAACTTTAT ATTCTTCCTG TAATATGATT CATTGTTTAG CGAATCAGAT 
    TTATGCTCGT GTTACTTGTG TAACTCGTTA CTATCACTAT TTATTGTGTG 
    GTCTCTGTTA ACCACAAATA GATACTTTAA AAC

    Gene models with high sequence identity

    1. AT2G46090.1 [+] show detail - Diacylglycerol kinase family protein
      E-value: 0; Score: 99.84

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Diacylglycerol kinase, catalytic domain 3.1e-06
    ProfileScan Diacylglycerol kinase, catalytic domain 34.745
    HMMPanther BMRU PROTEIN 1.1e-49
    HMMPanther SPHINGOSINE KINASE 1.1e-49
    HMMPanther BMRU PROTEIN 2.3e-23
    HMMPanther SPHINGOSINE KINASE 2.3e-23
    HMMPfam Diacylglycerol kinase, catalytic domain 4.4e-32

    See the detailed result >

    AT2G46090.1

    Model type
    Protein coding
    Short Description
    Diacylglycerol kinase family protein
    Curator Summary
    Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs.
    Computational Description
    Diacylglycerol kinase family protein; FUNCTIONS IN: diacylglycerol kinase activity, D-erythro-sphingosine kinase activity; INVOLVED IN: activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Diacylglycerol kinase, catalytic domain (InterPro:IPR001206), Conserved hypothetical protein CHP00147 (InterPro:IPR005218); BEST Arabidopsis thaliana protein match is: long-chain base (LCB) kinase 1 (TAIR:AT5G23450.2); Has 6078 Blast hits to 6077 proteins in 1657 species: Archae - 15; Bacteria - 4829; Metazoa - 327; Fungi - 124; Plants - 145; Viruses - 0; Other Eukaryotes - 638 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR