F22308

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22308

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22308

Determination of introduced cDNA(s)

  • RAFL05-16-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-E01 - Resource: pda07347

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-E01 - full reading 
    AATGGCTTCG ACGGCTACGA ACACTGATTT CTTCAAGACT TTGCTTTCTC 
    CTTTCTCAAA TGGGAATGCG GCGCAACGAA GTAGTAGACA GAACATTGTT 
    TGGTTAAATC GGAAGCAATC TGGAAATAAT AACAGATCTC TTCGTGTTAA 
    TGGATTATTC GGAGGCGGAA AAAAGGACAA TAAAGAGGAT GGACAATCAA 
    AGGCAGGAAT TCTAGGTAAC ATGCAGAATT TGTATGAGAC AGTGAAGAAA 
    GCTCAAATGG TTGTTCAAGT AGAGGCTGTT AGAGTGCAGA AGGAGCTTGC 
    TGTTGCTGAA TTTGATGGTT ATTGTCAAGG CGAGCTTGTC AAGGTTACAT 
    TATCAGGTAA CCAGCAACCA ATTCGCACTG ATATCACTGA TGCAGCAATG 
    GAGTTAGGTT CTGAAAAACT TTCACTGCTG GTCACAGAAG CATACAAAGA 
    CGCACATTCA AAGAGTGTAC TGGCTATGAA AGAAAGAATG AGTGATCTTG 
    CGCAGAGCTT AGGGATGCCA CCAGGCCTTG ATGGATTAAA GTAACAAAAC 
    TTAATCTTTT TTGTGATTTC TTTCAACTTA TAGGTATGAG AAGTCCAGTT 
    CTTTTTGTTG TATATCGATC AGGCAGAGAG AAATAGAGCT CTGTTCTACT 
    GAATCAGAGA GAGATATTTG AACC

    Gene models with high sequence identity

    1. AT4G30620.1 [+] show detail - Uncharacterised BCR, YbaB family COG0718
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Uncharacterised protein family UPF0133 1.2e-19
    HMMPfam Uncharacterised protein family UPF0133 6.1e-15
    HMMTigr Uncharacterised protein family UPF0133 3.29999802154459e-09
    Gene3D Uncharacterised protein family UPF0133 7.89999609889499e-20

    See the detailed result >

    AT4G30620.1

    Model type
    Protein coding
    Short Description
    Uncharacterised BCR, YbaB family COG0718
    Computational Description
    Uncharacterised BCR, YbaB family COG0718; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0133 (InterPro:IPR004401); BEST Arabidopsis thaliana protein match is: Uncharacterised BCR, YbaB family COG0718 (TAIR:AT2G24020.2); Has 1854 Blast hits to 1854 proteins in 759 species: Archae - 0; Bacteria - 1576; Metazoa - 0; Fungi - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR