F22340

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22340

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22340

Determination of introduced cDNA(s)

  • RAFL09-82-C23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-82-C23 - Resource: pda17856

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-82-C23 - full reading 
    CCGCCCTCTC TCGTCCTCGG ATTTTTCTCG TGCTTCACTG ATAATCCAGC 
    TTGACGATGT CGTTGACGGA GCTAGACGAC GGACTGGTTC GCAGGATGGC 
    CATGGGCGCA GTCTTCTCTG ATTTTGGAGG GAAGATACAT TCGGTGGGTT 
    TCCATAGGAC TGATGATCTA TTGGTCACAT CCAGCGAAGA TGATTCACTT 
    CGCCTCTTCG ATATCGCCAA CGCTAAACAG CTGAAGATTA CATACCATAA 
    GAAACATGGC ACCGATCGTG TATGCTTTAC CCATCATAGA CTGGCCCCCT 
    GAATCTCCAG ACAACCAATA TCACTTAAAT AAGTGATAGT CTTAATACTA 
    GTTTTTAGAC TAGTCATTGG AGAACAGATG ATTGATGTCT TAGGGCCGGA 
    GAAACGCAGA CGGCGTACCA CACAGGAAAA GATCGCAATT GTTCAGCAGA 
    GCTTTGAACC GGGGATGACG GTCTCCCTCG TTGCCCGGCA ACATGGTGTA 
    GCAGCCAGCC AGTTATTTCT CTGGCGTAAG CAATACCAGG AAGGAAGTCT 
    TACTGCTGTC GCCGCCGGAG AACAGGTTGT TCCTGCCTCT GAACTTGCTG 
    CCGCCATGAA GCAGATTAAA GAACTCCAGC GCCTGCTCGG CAAGAAAACG 
    ATGGAAAATG AACTCCTCAA AGAAGCCGTT GAATATGGAC GGGCAAAAAA 
    GTGGATAGCG CACGCGCCCT TATTGCCCGG GGATGGGGAG TAAGCTTAGT 
    CAGCCGTTGT CTCCGGGTGT CGCGTGCGCA GTTGCACGTC ATTCTCAGAC 
    GAACCGATGA CTGGATGGAT GGCCGCCGCA GTCGTCACAC TGATGATACG 
    GATGTGCTTC TCCGTATACA CCATGTTATC GGAGAGCTGC CAACGTATGG 
    TTATCGTCGG GTATGGGCGC TGCTTCGCAG ACAGGCAGAA CTTGATGGTA 
    TGCCTGCGAT CAATGCCAAA CGTGTTTACC GGATCATGCG CCAGAATGCG 
    CTGTTGCTTG AGCGAAAACC TGCTGTACCG CCATCGAAAC GGGCACATAC 
    AGGCAGAGTG GCCGTGAAAG AAAGCAATCA GCGATGGTGC TCTGACGGGT 
    TCGAGTTCTG CTGTGATAAC GGAGAGAGAC TGCGTGTCAC GTTCGCGCTG 
    GACTGCTGTG ATCGTGAGGC ACTGCACTGG GCGGTCACTA CCGGCGGCTT 
    CAACAGTGAA ACAGTACAGG ACGTCATGCT GGGAGCGGTG GAACGCCGCT 
    TCGGCAACGA TCTTCCGTCG TCTCCAGTGG AGTGGCTGAC GGATAATGGT 
    TCATGCTACC GGGCTAATGA AACACGCCAG TTCGCCCGGA TGTTGGGACT 
    TGAACCGAAG AACACGGCGG TGCGGAGTCC GGAGAGTAAC GGAATAGCAG 
    AGAGCTTCGT GAAAACGATA AAGCGTGACT ACATCAGTAT CATGCCCAAA 
    CCAGACGGGT TAACGGCAGC AAAGAACCTT GCAGAGGCGT TCGAGCATTA 
    TAACGAATGG CATCCGCATA GTGCGCTGGG TTATCGCTCG CCACGGGAAT 
    ATCTGCGGCA GCGGGCTTGT AATGGGTTAA GTGATAACAG ATGTCTGGAA 
    ATATAGGGGC AAATCCACAT CATCCTAGCT CTCTAATTTG CTCTTCTCGA 
    TACAATTTGG AGTCCACTGG TGAATCCTTG AGATATCTCT CAATGTATGA 
    TAATCGGATC CTACGCTACT TTAAAGGGCA TAAAGACAGG GTTGTATCAC 
    TTTGTATGTC TCCTATAAAT GATAGCTTCA TGTCTGGTTC TCTCGACCGA 
    AGTGTTAGAC TCTGGGATCT TCGTGTAAAT GCCTGCCAGG GAATTCTACA 
    TCTACGTGGT AGACCTGCAG TTGCGTATGA CCAACAAGGC CTTGTGTTTG 
    CAATTGCAAT GGAAGGAGGT GCTGTTAAAT TATTTGATTC CAGGTGTTAT 
    GACAAGGGTC CCTTTGACAC ATTTCTGGTG GGTGGGGATA CTGCTGAGGT 
    TAACGATATA AAATTCAGCA ACGATGGGAA ATCCATGCTC CTAACGACTA 
    CAAATAACAA TATCTACGTT CTTGATGCAT ATCGTGGAGA TAAGAAATGT 
    GGTTTTAGTT TGGAGCCTTC ACAGGGTACA CCCATAGAGG CCACCTTCAC 
    ACCAGATGGC AAGTATGTTC TGTCAGGTTC AGGTGATGGA ACCTTACATG 
    CGTGGAACAT CGAGAACCCA TCTGAGGTGG CGAGGTGGGA GAACAACATA 
    GGAGTAGTGT CGTGTCTGAA ATGGGCACCA CGTAGAGCCA TGTTCGTTGC 
    TGCTTCTACG GTTCTCACAT TCTGGATCCC AAACGACGGT GAATCACCAG 
    CCCCCGCCGA TCCTCCTACC GATCAACAAC AGTGACGACA TATATGTTTC 
    CATTATGCAC TTGTGTATCG TTTTTTAATG TTGACAATTA GAAAAATTTG 
    GAAGCAGTAG TATGTTAATC AAATTTAGAG TTTATGAATT TGAGTCTAGA 
    TGGTTACAAT ATGTTTTCTT TAATGACTAT TTACTCTTAT TTTACGTAAG 
    AAAAAAA

    Gene models with high sequence identity

    1. AT5G14530.1 [+] show detail - Transducin/WD40 repeat-like superfamily protein
      E-value: 0; Score: 99.89

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan WD40 repeat, conserved site 0
    superfamily WD40 repeat-like-containing domain 1.4e-36
    superfamily Polynucleotidyl transferase, ribonuclease H fold 8.1e-31
    Gene3D WD40/YVTN repeat-like-containing domain 2.9e-35
    Gene3D no description 1.7e-10
    Coil coiled-coil 0
    HMMPanther WD40 REPEAT PROTEIN SWD2 3e-16
    HMMPanther WD40 REPEAT PROTEIN SWD2 3.5e-109
    HMMPfam WD40 repeat, subgroup 2.4e-06
    HMMPfam WD40 repeat, subgroup 0.00063
    HMMPfam Integrase, catalytic core 1.1e-22
    HMMPfam Transposase IS3/IS911 7e-19
    HMMSmart WD40 repeat 4.5e-07
    HMMSmart WD40 repeat 4.6
    HMMSmart WD40 repeat 0.0039
    HMMSmart WD40 repeat 270
    ProfileScan WD40 repeat 2 14.251
    ProfileScan WD40 repeat 2 11.277
    ProfileScan WD40-repeat-containing domain 16.796
    ProfileScan Integrase, catalytic core 14.939
    ProfileScan WD40 repeat 2 9.205
    ProfileScan WD40-repeat-containing domain 9.125

    See the detailed result >

    AT5G14530.1

    Model type
    Protein coding
    Short Description
    Transducin/WD40 repeat-like superfamily protein
    Computational Description
    Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G66240.1); Has 22372 Blast hits to 13576 proteins in 557 species: Archae - 62; Bacteria - 5277; Metazoa - 7900; Fungi - 4335; Plants - 2143; Viruses - 0; Other Eukaryotes - 2655 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR