F22738

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22738

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22738

Determination of introduced cDNA(s)

  • RAFL05-14-K17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-14-K17 - Resource: pdz87484

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-14-K17 - 5 prime EST 
    TAAAAGCTTG CAAAAACCAT AAGCTTATCT ACTTACTCAT CTCTCTCACA 
    AATCATTTTC TCAGACTTCT CTCTTTCTCT TAAACCATGC CTGAGGCACC 
    AAAGAAAGAA TCTTTAGAGG TTTTCGATCT GACGCTTGAC CAAAAAAACA 
    AGCAAAAGCT TCAGTTGATC GAAGAACTCA CCTCTAACGC CGACCAAGTC 
    CAAAGACAAG TCTTGGAGGA GATCTTGACC CGCAATGCTG ACGTGGAGTA 
    TCTCAGGCGA CACGACCTCA ACGGTCGCAC TGACCGTGAG ACTTTCAAAA 
    ACATCATGCC CGTTATCACC TACGAAGATA TTGAGCCTGA GATCAACAGG 
    ATCGCTAATG GTGATAAATC ACCTATCCTC TCTTCCAAAC CCATCTCTGA 
    GTTCCTCACA AGCTCTGGGA CATCTGGTGG GGAGAGGAAG CTAATGCCAA 
    CAATCGAAGA GGAGCTAGAC AGGAGATCAC TCCTCTACAG TCTCTTGATG 
    CCTGTGATGA GCCAGTTCGT TCCTGGTCTC GAAAACGGCA AAGGAATGTA 
    TTTCTTGTTC ATCAAGTCCG AATCCAAGAC TCCAGGAGGC CTCCCTGCTC 
    GTCCTGTCTT AACCAGTTAC TACAAATCTT CCCATTTCAA AGAAAGACCC 
    TATGAT

    Gene models with high sequence identity

    1. AT4G27260.1 [+] show detail - Auxin-responsive GH3 family protein
      E-value: 0; Score: 100.00

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL05-14-K17 - 3 prime EST 
    GGTTGGAGAA AACATGATTT GCCTTTTGTA CAACTGGTTT TCAAACCCAC 
    AGGGACTATG GATATTAAAA GGATAACAAA AAAAAAAGAA CAAAAGATTA 
    AACTAAAATT AAGATTAGAG AAGACATCAT CATTTGCAAG TCCAAGTCCC 
    AAACCTTCTA GCTCAAAGAG AGTCTCTTCA CGTTCCACAT TCCATCTTAG 
    TTACTCCCCC ACTGTTTGTG ACCAGGAACC CATTTAGGAC ACTTGGGGCT 
    GAAGTAACTA TCAACAACCC TTGAGTTCAA TAGCTCGATA ATTGGAGCAA 
    ACTTCACGCA TCTCGGCGTC TTATACTGAT TAATCGATGC TCCCAAGCTG 
    ATTGCGTAAT CCATGAGCTT ATCGAATGTC CCTGGCTCAA CAATCTTGAT 
    CTCAAGCGGG CCTATGGACT TGTCACTAAC CCTTCCTTGT CTATAAACAG 
    TGTTGAATGA CTCTTCTACA GCTAAGCAGC AGTCCTCGAA GACCGAAGGA 
    GGGATCGGTG TGTTTCCATC CAAACATAGC T

    Gene models with high sequence identity

    1. AT4G27260.1 [+] show detail - Auxin-responsive GH3 family protein
      E-value: 0; Score: 100.00

    AT4G27260.1

    Model type
    Protein coding
    Short Description
    Auxin-responsive GH3 family protein
    Curator Summary
    encodes an IAA-amido synthase that conjugates Asp and other amino acids to auxin in vitro. Lines carrying insertions in this gene are hypersensitive to auxin.
    Computational Description
    WES1; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT5G54510.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR