F22810

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22810

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22810

Determination of introduced cDNA(s)

  • RAFL06-87-L14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-87-L14 - Resource: pda07765

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-87-L14 - full reading 
    AAAATCCTCC TTCGAAGCAG AAGTAACAGC AACCAAAAAT GACGACAATG 
    GCGACACAAG GCGCTTGGCT ACGAATGACC TCATCAGCCA AGTCCATGAC 
    CAAGTCAACC GTGACTTCAA AGGAGCTTGG ATTCCTCACC TCCCAGCTCA 
    GCGGCTTAAG AATCTCATAT ACTCCCAGTG ACGTCATCAA CCGTATCTCC 
    CTTCCTTCGT TCCCCGGGAT TCAGCCAATC GTCGCACGTA GAATCTGCCC 
    TTTTACTGGG AAGAAAGCAA ACAGAGCAAA CAAAGTTTCA TTCTCTAACC 
    ACAAGACCAA GAAGTTGCAA TTCGTCAACT TACAATACAA GAGAGTTTGG 
    TGGGAAGCTG GCAAACGTTT TGTCAAACTT CGTTTATCAA CTAAGGCTTT 
    GAAGACCATT GAGAAGAACG GACTCGACGC TGTTGCCAAG AAAGCCGGCA 
    TTGATCTTCG CAAGAAATAG ATATGATGAT CGCAAAGTTT ATTATATACA 
    TTTCTTGCTT CTCCTTTTGC AGTACTCGTA CATTTCCTTT CTAGATTTTG 
    GTAAGTATCA ATGGAATCTC TGAGTTGTTG TATCAGACAC TGTCAAGAAA 
    AGACTTTAAA GAGAAAC

    Gene models with high sequence identity

    1. AT2G33450.1 [+] show detail - Ribosomal L28 family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HAMAP Ribosomal protein L28 13.73
    HMMPfam Ribosomal protein L28 1.8e-24
    HMMTigr Ribosomal protein L28 4e-20

    See the detailed result >

    AT2G33450.1

    Model type
    Protein coding
    Short Description
    Ribosomal L28 family
    Computational Description
    Ribosomal L28 family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L28 (InterPro:IPR001383); Has 3594 Blast hits to 3594 proteins in 1265 species: Archae - 0; Bacteria - 2589; Metazoa - 1; Fungi - 7; Plants - 57; Viruses - 0; Other Eukaryotes - 940 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR