F22812

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F22812

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F22812

Determination of introduced cDNA(s)

  • RAFL05-13-J04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-J04 - Resource: pda02569

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-J04 - full reading 
    ATCATCATCA GTACCATCTC CTCGTTTTGA TAAAAATCTC TGAATCTCTC 
    CAAGCTCTCT TCTCATCAAA CCATGGATCC TTACAAGTAT CGTCCAGCTA 
    GTTCTTACAA CTCTCCCTTC TTCACCACCA ACTCTGGTGC TCCTGTATGG 
    AACAACAACT CCTCCATGAC CGTTGGACCC AGAGGTCCTA TCCTTCTTGA 
    GGATTACCAT CTCGTTGAGA AGCTTGCCAA TTTCGACAGG GAACGGATTC 
    CAGAGCGTGT GGTTCATGCC AGAGGAGCCA GTGCTAAAGG TTTCTTTGAG 
    GTCACTCATG ATATCTCTAA CCTCACTTGT GCTGACTTTC TCCGAGCTCC 
    CGGTGTTCAG ACTCCTGTCA TTGTCCGGTT CTCCACCGTT ATCCATGAGC 
    GTGGAAGTCC CGAGACCTTG AGAGACCCTC GTGGTTTTGC AGTCAAGTTC 
    TACACCAGAG AGGGGAACTT TGATCTTGTT GGAAACAACT TTCCTGTTTT 
    CTTCATCCGC GATGGGATGA AGTTCCCTGA CATGGTCCAC GCTCTTAAGC 
    CGAACCCAAA ATCTCACATC CAAGAGAACT GGAGAATCCT TGACTTCTTC 
    TCCCACCACC CTGAAAGTTT GAACATGTTC ACTTTCCTCT TCGATGATAT 
    CGGTATCCCA CAAGATTACA GGCACATGGA TGGTTCAGGT GTCAATACAT 
    ACATGTTGAT CAACAAAGCT GGCAAAGCTC ACTACGTGAA GTTCCATTGG 
    AAACCAACTT GTGGAGTCAA GTCTCTTTTG GAAGAAGATG CAATTCTTGT 
    TGGAGGAACC AACCACAGTC ATGCGACTCA AGACTTGTAT GACTCTATAG 
    CTGCTGGAAA CTACCCTGAA TGGAAGCTCT TTATCCAAAT CATTGATCCT 
    GCTGATGAAG ACAAGTTCGA CTTTGACCCG CTCGATGTGA CCAAGACCTG 
    GCCTGAGGAT ATCTTGCCTC TTCAACCTGT TGGACGTATG GTGTTGAACA 
    AGAACATTGA CAACTTCTTT GCAGAGAATG AGCAACTTGC TTTCTGTCCT 
    GCAATTATTG TCCCAGGGAT ACATTACTCA GATGATAAGC TGCTTCAAAC 
    CCGTGTCTTC TCCTATGCCG ATACTCAGAG ACACCGTCTT GGACCAAACT 
    ACCTTCAGCT GCCAGTCAAT GCTCCAAAAT GTGCTCACCA CAACAACCAC 
    CATGAGGGAT TCATGAATTT CATGCACAGG GACGAGGAGG TTAACTACTT 
    CCCGTCGAGG TATGACCAGG TTCGTCATGC TGAGAAGTAT CCAACTCCGC 
    CTGCTGTCTG TTCTGGAAAA CGTGAGAGGT GCATTATTGA GAAAGAGAAC 
    AACTTCAAGG AGCCTGGAGA GAGATACCGT ACCTTTACAC CAGAGAGGCA 
    AGAACGATTC ATCCAGAGAT GGATTGATGC CCTATCCGAC CCACGCATCA 
    CGCATGAAAT CCGCAGTATC TGGATCTCTT ACTGGTCTCA GGCTGATAAG 
    TCTTTGGGAC AGAAGCTGGC AAGCCGTCTG AACGTGAGAC CAAGCATCTA 
    AAACGAGTGA AAGAATTCTT GATTGGCCTT TCTGTGGTTG TTAATTAGCA 
    GAGAAAAGAA AATGGGAAGA GATCAAAGTT GCGATAATAC AATCTTCATC 
    ATGTGGATCT TCTGTGCTAT GTTATAATAG TATCTGTTTA AAGACCAAAA 
    GAACCTTGTG TGTTGTTGTG TCTCTCGTTT ATCAGAATAA TACATTATAC 
    ATTGAAGAT

    Gene models with high sequence identity

    1. AT4G35090.1 [+] show detail - catalase 2
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    FPrintScan Catalase related subgroup 1.6e-81
    FPrintScan Catalase related subgroup 1.6e-81
    FPrintScan Catalase related subgroup 1.6e-81
    FPrintScan Catalase related subgroup 1.6e-81
    FPrintScan Catalase related subgroup 1.6e-81
    FPrintScan Catalase related subgroup 1.6e-81
    PatternScan Catalase 0
    PatternScan Catalase 0
    Gene3D Catalase, N-terminal 2.4e-208
    superfamily Catalase-like domain, haem-dependent 8.2e-215
    HMMPfam Catalase related subgroup 2.7e-182
    HMMPfam Catalase-related immune responsive 2.4e-19
    HMMPanther Catalase-like domain, haem-dependent 1.9e-285
    ProfileScan Catalase, N-terminal 74.873

    See the detailed result >

    AT4G35090.1

    Model type
    Protein coding
    Short Description
    catalase 2
    Curator Summary
    Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene. Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).
    Computational Description
    catalase 2 (CAT2); FUNCTIONS IN: protein binding, catalase activity, cobalt ion binding; INVOLVED IN: in 10 processes; LOCATED IN: mitochondrion, cytosolic ribosome, stromule, peroxisome, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Catalase (InterPro:IPR002226), Catalase related subgroup (InterPro:IPR018028), Catalase-like domain, haem-dependent (InterPro:IPR020835), Catalase, N-terminal (InterPro:IPR011614), Catalase-related immune responsive (InterPro:IPR010582); BEST Arabidopsis thaliana protein match is: catalase 1 (TAIR:AT1G20630.1); Has 6114 Blast hits to 6094 proteins in 1849 species: Archae - 22; Bacteria - 4292; Metazoa - 675; Fungi - 546; Plants - 461; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR