F23040

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23040

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23040

Determination of introduced cDNA(s)

  • RAFL16-35-L12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-35-L12 - Resource: pdz88577

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL16-35-L12 - 5 prime EST 
    ATCAATGGCG TCTGCAACGA CTCTTCTCTT CCACCACGGT TCCACTCGAG 
    TCCTCGTCGC TCGTAGACGG TGCCAAGCTT CAGTCCTTAG ACCCTACGGC 
    GGTTTAAAGC CCTTTCTTTC CTTCTGCAGC TTACCTAACT CCACTGCGCC 
    GTTCCGGGAT TCGTTGAGAG CAAAATCCGA TGGATTGGCT CGGGCCTATG 
    TTACCGGAGC GCCGCCTATC GTGGAAGAAC CAGACCCAAA GATTGAAGAA 
    TCCAAATCTG AGGCTGAATC GAAGGATTTA ATTAGTTGGG GGCTTCTGTG 
    GAGCTTGATG AGCAAGCACA AGCTCAGGCT CAGTGTTTGC TTATTGACTC 
    TCCTTGGATG CAGTACTTGC ACTCTCTCTA TGCCTGTTTT TTCTGGTAGA 
    TTCTTTGAAG TACTGATTGG GGTGAGACCG GAGCCTTTGT GGCGGCTGCT 
    GAGCAAAATT GCTGNTTTGT ACTCGTTGGA ACCCATCTTT ACTATTGCTT 
    TTTGTGACCA ACATGACTGC TATCTGGGAA AACNTTATGG CAATATTAAN 
    AGCTCA

    Gene models with high sequence identity

    1. AT4G25450.2 [+] show detail - non-intrinsic ABC protein 8
      E-value: 0; Score: 99.28

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL16-35-L12 - 3 prime EST 
    AAACTATTGT TAATCAAAGT TGTATATAAA ACCAGATTCT ACCATTTGTA 
    ATTTTGTAGT AATTTGTTAC AAATTACACC GAGTTAAGGT AAATTACTCA 
    AAGGCTAGCT CTCTGAGTGC CAACAAGTGA AGCATATGAT CCCTTTTGCG 
    CTACAATTCG GAATGTGTTC CAAGCTCTAT GATCTTCCCA TCAGAGCACA 
    CAGCGATCTG ATTCGCGCTC TGAACTGTGC TCAGTCTGTG AGCGATGACT 
    AATGTTGTCC TGTCTTTCAT CAGACGGTTC AACGCACTCT GGACTAACCG 
    CTCGCTCACT GGATCCAGCG CACTTGTGGC CTCATCGAGA ATCAAGATGG 
    GGGCATTCTT CAGCAGAGAT CGGGCTATGG CAACTCTCTG TCGTTGTCCT 
    CCGCTAAGCA AGCCTCCT

    Gene models with high sequence identity

    1. AT4G25450.3 [+] show detail - non-intrinsic ABC protein 8
      E-value: 0; Score: 99.28

    AT4G25450.2

    Model type
    Protein coding
    Short Description
    non-intrinsic ABC protein 8
    Curator Summary
    member of NAP subfamily
    Computational Description
    non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT4G25450.3

    Model type
    Protein coding
    Short Description
    non-intrinsic ABC protein 8
    Curator Summary
    member of NAP subfamily
    Computational Description
    non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 420091 Blast hits to 380969 proteins in 4118 species: Archae - 7380; Bacteria - 326284; Metazoa - 9897; Fungi - 7311; Plants - 5559; Viruses - 14; Other Eukaryotes - 63646 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR