F23129

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23129

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23129

Determination of introduced cDNA(s)

  • RAFL09-44-A13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-44-A13 - Resource: pda17730

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-44-A13 - full reading 
    GAAGATTGTC CTTAAATACC TTTATTCTGT ATTATTTTAT TTTTGTTGTT 
    TTGTAGACCT ATACTATGAT TCTCTTTATT TTACGAGAAA GTAAGTAAAG 
    GTGATGAGAA CATACCAATC CACCGGTGAC GTATTTAAGG AGGAAACAAG 
    CGGCGGTGGA GCCGAGAAGC TGAGCGATCC AGTAGAAAAC TCCGGTGATG 
    ACTGTGATTT GACCACCGAC AGCAAGACCA AAAGTGACGG CTGGGTTCAC 
    ATGGCCACCG GAGATGTTGG CTCCGATTGC AACGGCCACG AAGAGAGCAA 
    AACCATGACA AACCGCGATG GCCACTAGTC CCGGTGTATC AAGAGCAGCG 
    TCCGACGTCA GCTTTGCTAT ATACACAAAT GTGACACATT CATTAAGTAT 
    TGAACCCATT AATTTTTACA AATTACGAAA ATTATTTAGA TCCCATTATT 
    TAACTACGAG TATACGAACC GTAGGCAATG GCAGAGCCAA CACCAGCGAA 
    AACAAAGAGT AAAGTGGAGA TGAACTCAGC GAGGTAAGCT CTTAGAGAAG 
    CCAAGCTGAA TGAATCATCA AAGGAACCAA AGGCAACTCC AGCCATTGTT 
    GTAGATGAAG AAGAAAGAAT AAGGAAATGT TTTGAAGGGT TTTTTTTTGT 
    TTAGTGAAGA AGATGATAAG ACCTTTTGAA TGCTGTTCTC TTTATATAGG 
    AGTATCGTTC ATGTATCCAT GCATATAACT TAAGTTTTAT AAAAAAATAC 
    TATTTAATGA GTTTCTGTGG TGTGGTGGGT TACGTTGGAC CCAAAAAAAA 
    AA

    Gene models with high sequence identity

    1. AT3G16240.1 [+] show detail - delta tonoplast integral protein
      E-value: 2e-143; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Major intrinsic protein 1.5e-17
    HMMPanther TONOPLAST INTRINSIC PROTEIN 8.9e-14
    HMMPanther Major intrinsic protein 8.9e-14
    HMMPanther TONOPLAST INTRINSIC PROTEIN 5.9e-37
    HMMPanther Major intrinsic protein 5.9e-37
    FPrintScan Major intrinsic protein 4.3e-14
    FPrintScan Major intrinsic protein 4.3e-14
    Gene3D Major intrinsic protein 4.3e-16
    PatternScan Major intrinsic protein, conserved site 0
    HMMPfam Major intrinsic protein 6.3e-25
    HMMPfam Major intrinsic protein 1.6e-06

    See the detailed result >

    AT3G16240.1

    Model type
    Protein coding
    Short Description
    delta tonoplast integral protein
    Curator Summary
    Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane.
    Computational Description
    delta tonoplast integral protein (DELTA-TIP); FUNCTIONS IN: water channel activity, ammonia transmembrane transporter activity, urea transmembrane transporter activity, methylammonium transmembrane transporter activity; INVOLVED IN: transport, urea transport, water transport; LOCATED IN: in 10 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Major intrinsic protein, conserved site (InterPro:IPR022357), Aquaporin (InterPro:IPR012269), Major intrinsic protein (InterPro:IPR000425); BEST Arabidopsis thaliana protein match is: tonoplast intrinsic protein 2;3 (TAIR:AT5G47450.1); Has 10937 Blast hits to 10900 proteins in 2182 species: Archae - 87; Bacteria - 5160; Metazoa - 1503; Fungi - 423; Plants - 2497; Viruses - 0; Other Eukaryotes - 1267 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR