F23406

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23406

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23406

Determination of introduced cDNA(s)

  • RAFL11-11-H16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-11-H16 - Resource: pda17989

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-11-H16 - full reading 
    GGAGGAGAAA CCAAAATATA CACAAAGTTA GAGAAAAAAA GAAGAGAAAA 
    GGAGTTATAT ATGGATTGTA TTTTACTTAT TCTGACTACT CTTGTTGCCA 
    TTTTCATCGT CAAGATTGTT CTCCTAGTCA CTAAACCTAA CAAAAACCTT 
    CCACCGTCGC CAAATATATG TTTTCCGATC ATCGGACACC TTCACCTCCT 
    CAAAAAGCCA CTGCTACACC GGACTCTCAG CCATCTCTCC CACTCCCTCG 
    GCCCCGTCTT TTCTCTACGC CTCGGCTCTC GCCTTGCCGT TATCATCTCA 
    TCTCCAACGG CAGCCGAAGA ATGCTTCTTG ACGAAAAACG ACATCGTTTT 
    AGCAAATCGG CCTCGTTTCA TCATGGGCAA GTATGTGCCT TATGACTACA 
    CCTCCATGGT TACGGCTCCT TACGGTGACC ACTGGCGAAA CCTCCGTCGT 
    ATCACCGCTT TAGAAGTCTT CTCCACAAAT CGACTCAACG CTTCAGCGGA 
    AATCCGACAT GACGAAGTTA AGATGCTTCT CCAAAAGCTT CACGATTTAT 
    CTGTCGAACG CCCGGCTAAA GTGGAGTTAC GACAGTTACT AACGGGTCTT 
    ACCCTAAATG TGATAATGAG AATGATGACC GGAAAGAGAT TCTTCGAGGA 
    AGATGATGGC GGAAAGGCGG GGATAAGTTT GGAGTTCCGG GAACTAGTGG 
    CGGAGATTCT AGAGCTCTCT GCGGCGGACA ATCCAGCTGA TTTTTTGCCG 
    GCTCTACGGT GGTTTGACTA CAAAGGTTTG GTCAAGAGAG CAAAGAGGAT 
    TGGAGAAAGG ATGGATAGTT TATTACAAGG GTTTTTGGAT GAGCATAGAG 
    CTAACAAAGA CAGATTGGAG TTTAAGAACA CCATGATTGC TCATTTACTT 
    GATTCTCAAG AAAAAGAGCC TCATAACTAC AGTGATCAAA CCATCAAAGG 
    TCTTATACTG ATGGTAGTAG GAGGCACAGA TACATCGGCC TTAACCGTGG 
    AATGGGCAAT GTCAAATTTA TTGAATCATC CACAAATACT AGAGACCACG 
    AGACAAAACA TTGATACTCA AATGGAAACA TCAAGTAGTC GTCGTTTGTT 
    GAAAGAAGAA GATTTGGTAA ACATGAACTA CTTGAAAAAT GTTGTGTCGG 
    AGACACTAAG ACTTTACCCT GTGGCACCAC TTATGGTTCC TCATGTGCCA 
    TCTTCTGACT GTGTAATCGG TGGATTCAAC GTTCCACGTG ATACGATCGT 
    GTTGGTTAAC TTGTGGGCTA TACATCGAGA TCCAAGCGTG TGGGATGATC 
    CAACGTCATT TAAGCCGGAG AGATTTGAAG GGAGTGATCA GTTTGGACAT 
    TACAATGGTA AAATGATGCC GTTTGGGTTA GGAAGACGGG CTTGTCCTGG 
    GTTGAGTTTG GCTAACCGGG TTGTTGGGTT ATTATTGGGT TCGATGATTC 
    AGTGCTTTGA GTGGGAAAGC GGCTCAGGAG GTCAGGTTGA TATGACTGAA 
    GGTCCAGGAC TTAGTTTGCC TAAGGCTGAA CCATTGGTTG TCACGTGCAG 
    AACACGTGAG ATGGCTTCCG AGTTGTTGTT CTTCGGATCA GAGCCAAGCA 
    ATAAGAATGT CTAGATTTGA TTTTATAAAT TTGTAAGTTA ATACATTATT 
    ACATGCATAT ATGATTCAGT GATTTATTAA GCAGCAAAAT GTTTGGAGAC 
    AAAAAAAAAA

    Gene models with high sequence identity

    1. AT4G37310.1 [+] show detail - cytochrome P450, family 81, subfamily H, polypeptide 1
      E-value: 0; Score: 99.77

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Cytochrome P450, conserved site 0
    superfamily Cytochrome P450 2.9e-114
    HMMPfam Cytochrome P450 3.1e-90
    Gene3D Cytochrome P450 4.5e-107
    FPrintScan Cytochrome P450, E-class, group I 1.1e-40
    FPrintScan Cytochrome P450, E-class, group I 1.1e-40
    FPrintScan Cytochrome P450, E-class, group I 1.1e-40
    FPrintScan Cytochrome P450, E-class, group I 1.1e-40
    FPrintScan Cytochrome P450, E-class, group I 1.1e-40
    FPrintScan Cytochrome P450, E-class, group I 1.1e-40
    FPrintScan Cytochrome P450, E-class, group I 1.1e-40
    FPrintScan Cytochrome P450, E-class, group I 1.1e-40
    FPrintScan Cytochrome P450, C-terminal 9.4e-10
    FPrintScan Cytochrome P450, C-terminal 9.4e-10
    FPrintScan Cytochrome P450, C-terminal 9.4e-10
    HMMPanther CYTOCHROME P450-RELATED 0
    HMMPanther Cytochrome P450 0

    See the detailed result >

    AT4G37310.1

    Model type
    Protein coding
    Short Description
    cytochrome P450, family 81, subfamily H, polypeptide 1
    Curator Summary
    member of CYP81H
    Computational Description
    "cytochrome P450, family 81, subfamily H, polypeptide 1" (CYP81H1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily D, polypeptide 5 (TAIR:AT4G37320.1); Has 33392 Blast hits to 33202 proteins in 1712 species: Archae - 63; Bacteria - 4035; Metazoa - 11608; Fungi - 7041; Plants - 9430; Viruses - 3; Other Eukaryotes - 1212 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR