F23726

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23726

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F23726

Determination of introduced cDNA(s)

  • RAFL16-11-C23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-11-C23 - Resource: pda19402

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-11-C23 - full reading 
    AGTAACTTGT TTATTCAATA CCAGAGCTAC CTCAAATGCA ATTCAAACAA 
    ATCTCTCTAT ATCTATTAAC TTTTTGAGTT ATTAGCATCC ATCAATCAAA 
    TACAAGAATT GAGATCATAG CTTAAGTACC TTCCATTGGA GATCTCATTT 
    TTGGGTTGGA AACCAAAAAA GGGACCTTGA CCAGCAGCTT CAAGCTTTTT 
    CTGTTTAAAG TACTCTTGAA GCTCTTTAGC CTTTTGTCTC TGAAACTCCA 
    CTGTAGTTAC ACTCTTCCCA TCAACAGCTA CAGCTTTCTG CGGCGGCGGA 
    GAAGGAGGAG GAGAGGAAGA TGGCTGTGAT GGAGGAACAG GTTTTTGAGG 
    CTCCCGGAGA GTAGGAGGAG CCGATGGTCT TCTTAAAGGA CCTTCTGTCT 
    GAGAGCATCT GATGATGAAG ACACATGGCT TAGTCGTTGT TGAGAATCTA 
    AAAGACGACG AAGCTGTCGA AGAAGAAGAT GAAGATGATG GATTTAGAAT 
    CCTGATACAT TGAATCGGTG AAGCTACTGA CATTTTTTTG TTAGTTGAAT 
    TGTCTGATTT TCGAAGCTTT GGTTCTGTCT TTTGGTAATG TCTTTGTGGA 
    TGTGATATGG CCAAGTCTCA TGGTTATGTG CAAATGGTAC TTTCGTAATC 
    ATCCCACGCG CGTTGAAAGC GCGTGTAATA GTTTTAACTG TTGTTTGACT 
    TGAAAGCTAA AACCAAGTAA TGATGATTGG GTAGATTTTT TTTTAAGAGC 
    TGAAACTTTG GTTAACCAAA CCGGAAAGAG CCGGTTTATT TGGTTGTCGG 
    TTAACCAAAG TATTTGTAAA GTGTTGTTGA AAAGAAATTC GGTTTGGTTC 
    TTGGGTAAAA AAAAAA

    Gene models with high sequence identity

    1. AT1G34000.1 [+] show detail - one-helix protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G34000.1

    Model type
    Protein coding
    Short Description
    one-helix protein 2
    Curator Summary
    Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions.
    Computational Description
    one-helix protein 2 (OHP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 171 Blast hits to 159 proteins in 56 species: Archae - 0; Bacteria - 5; Metazoa - 24; Fungi - 6; Plants - 64; Viruses - 16; Other Eukaryotes - 56 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR