F23734

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F23734

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F23734

Determination of introduced cDNA(s)

  • RAFL09-50-F07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-50-F07 - Resource: pda06447

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-50-F07 - full reading 
    CCCAAATACA AAACTCCCGA AAATCTCTCT CTTTTATTCT TTCTTTCTTC 
    TTCTTCTTCC CCAACTTGAA AAAAAAAAGT AAACACGAAA ATGTCTCCGT 
    CTTGGCTCCG CCCAACCGCC GATCACAATC ATCCTCCACC GCAACCGCCG 
    TCGCAATCAC CGTCCCCTCT ATCTTCCGGT GATCCGAATC TCACAACATG 
    TCTCTACCAA ACAGATCACG GCGTCTTCTA TCTAACATGG TCCCGAACTT 
    TCTTAGGAGG CCACTCTGTG AATCTCTTCC TCCATTCACA AGATTACTAC 
    AACCACTCTT CGCCACTCTC TTTCTCCTCC GCTGATCTCT CTCTTTCCTC 
    CGCCGTCTCT TTCCATCTCA ACTTAAACAC ATTAGCTTTC TGGAAAAAAC 
    GTGGATCCAG ATTCGTTTCT CCCAAAATCC AAGTCTTCTG GGACTTAAGC 
    AAAGCCAAAT TCGACTCTGG ATCCGAACCT AGATCCGGAT TCTACATCGC 
    TGTAGTTGTT GACGGAGAGA TGGGACTATT AGTCGGAGAT TCAGTCAAAG 
    AAGCTTACGC TCGTGCTAAA TCGGCGAAAC CTCCGACGAA TCCGCAAGCT 
    CTTCTGTTGA GGAAAGAGCA CGTGTTTGGA GCTAGGGTTT TCACAACGAA 
    AGCGAGATTT GGAGGGAAGA ACAGAGAGAT TTCTATTGAT TGTCGTGTTG 
    ATGAAGACGC TAAGCTCTGT TTTAGCGTTG ATTCGAAACA GGTTCTGCAG 
    ATCAAGAGAC TTAGATGGAA ATTTAGAGGA AATGAGAAAG TTGAAATCGA 
    TGGAGTTCAT GTTCAGATCT CTTGGGATGT ATACAATTGG TTGTTTCAGA 
    GTAAAAGTTC CGGTGACGGC GGAGGAGGAG GAGGACACGC CGTGTTTATG 
    TTTAGATTCG AGAGTGATCC AGAAGCAGAG GAGGTTTGTG AAACGAAGAG 
    GAAAGAAGAA GAAGATGAGA AAAATCGAAA CGGTATCGTT TTATGGAAGC 
    CGAAGAAGCA ATGTGGAAAT AGTTTTGGGA TTAAAGGGAT TGTTGAGTGG 
    AGGAAGATGA GGAAGAGATT TGTTAAGAGT AAGAGAAGTT CTTCGTCGTC 
    TTCGATTTCG ATGTCGTCGG CTTCTTCGGC GTGTAGCTCG TCGGTTATGG 
    AATGGGCTAG TAGTGCTGAT GAGGCGGAGT ACGGCGGAGG AGGTTGTTCT 
    GGTTCCGGTT CCGGCAATGG TCTTGGATTC TCATTACTGG TTTACGCTTG 
    GATTAAGTGA AAATATTCTT TTTCGAGGGA AATAAGAAGT TACTGTTTTC 
    GGTTAATTTT TTTTTTTAAT ATGTTCTTCT TTCTTTTTTA TATTAATTTT 
    CCCTCTGAAA CC

    Gene models with high sequence identity

    1. AT5G11000.1 [+] show detail - Plant protein of unknown function (DUF868)
      E-value: 0; Score: 99.93

     

    InterPro Scan Digest

    See the detailed result >

    AT5G11000.1

    Model type
    Protein coding
    Short Description
    Plant protein of unknown function (DUF868)
    Computational Description
    Plant protein of unknown function (DUF868); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF868, plant (InterPro:IPR008586); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF868) (TAIR:AT2G25200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR