F24016

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24016

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24016

Determination of introduced cDNA(s)

  • RAFL09-51-C04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-51-C04 - Resource: pda06484

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-51-C04 - full reading 
    ACGAATATTT TTCTTCTTCG TCTCTCTCTC TCAGCTCTTG AAGTCTTTGG 
    TCTGTTGGCG AATTTTCAAG CAGCTTTCTA ATTCTGAACT GAAAATTTCG 
    TCTTTGGAAC TTTATATTCT CTCATCTGAA ACTGAAGGAG AAGGAAGATG 
    ACGACTATGG AGAGTTTGAT TGGGTTAGTT AATAGGATAC AGAGAGCATG 
    TACCGTACTC GGTGACTATG GTGGTGGAAC TGGAAGTAAC GCTTTCAATT 
    CTCTCTGGGA AGCTCTTCCA ACCGTCGCCG TCGTCGGTGG TCAGAGTTCT 
    GGGAAATCTT CGGTTCTTGA GAGTATAGTT GGGAGAGATT TTCTTCCTAG 
    AGGATCTGGT ATCGTTACGA GACGGCCTTT AGTGTTGCAG CTTCATAAGA 
    CTGATGATGG AACAGAGGAG TATGCAGAGT TCCTTCATCT TCCCAAGAAG 
    CAATTCACAG ATTTTGCTTT GGTTCGCAGG GAGATTCAGG ATGAGACTGA 
    TAGAATCACA GGGAAAAACA AACAGATATC TCCAGTTCCT ATTCACCTCA 
    GTATCTACTC TCCAAATGTT GTGAATTTGA CACTCATTGA TTTGCCCGGT 
    TTAACTAAAG TGGCTGTTGA GGGACAGCCG GAAACCATTG CTGAGGATAT 
    CGAATCCATG GTTCGCACAT ATGTTGATAA GCCCAATTGT ATCATATTGG 
    CTATATCTCC TGCCAACCAA GACATTGCCA CATCAGATGC AATTAAGCTC 
    GCAAAAGATG TCGATCCAAC AGGTGAGAGG ACATTTGGTG TTCTTACCAA 
    GTTAGACTTG ATGGACAAAG GAACTAATGC GTTAGAAGTT CTTGAAGGAA 
    GATCTTACAG GCTGCAACAT CCTTGGGTTG GGATAGTGAA CCGTTCACAA 
    GCAGATATTA ATAAGAATGT CGATATGATG CTTGCAAGAC GCAAGGAACG 
    AGAATATTTT GATACCAGTC CTGACTATGG TCACTTAGCC AGCAAAATGG 
    GTTCAGAATA TCTGGCAAAG CTGCTCTCTA AGCACTTGGA GTCTGTTATC 
    AGGACCCGTA TTCCAAGTAT ACTATCCTTA ATAAACAAAA GCATTGAAGA 
    ACTTGAAAGA GAGTTAGACC GAATGGGTCG GCCTGTCGCA GTTGATGCTG 
    GGGCTCAACT ATACACTATA TTGGAGATGT GCCGTGCATT CGATAAGATA 
    TTCAAGGAAC ATCTTGATGG CGGGCGTCCT GGAGGTGACC GTATCTATGG 
    AGTCTTTGAC AACCAACTTC CAGCTGCACT TAAAAAGCTT CCTTTTGATC 
    GCCATCTTTC TCTACAAAGC GTGAAGAAAA TCGTGTCCGA GGCAGATGGT 
    TATCAACCTC ACTTGATTGC ACCAGAACAG GGTTATCGCC GTCTAATCGA 
    AGGGGCACTG GGTTACTTTA GAGGTCCAGC TGAAGCTTCT GTGGATGCTG 
    TTCACTATGT CTTGAAAGAG CTTGTGAGGA AATCAATATC AGAAACTGAG 
    GAGCTAAAGC GTTTCCCTTC ACTGCAAGTC GAGCTTGCTG CAGCAGCCAA 
    CAGCTCCTTG GAGAAATTCA GGGAAGAAAG CAAGAAGTCG GTTATTCGAC 
    TTGTTGACAT GGAATCTGCG TATCTAACCG CTGAGTTCTT CCGGAAACTT 
    CCTCAAGAAA TAGAAAGACC AGTAACCAAC AGCAAAAACC AAACCGCTTC 
    TCCTTCGTCT GCAACATTAG ACCAGTATGG AGACGGACAT TTCAGAAGGA 
    TAGCATCAAA TGTATCTGCG TATGTTAATA TGGTTTCGGA CACACTTCGT 
    AACACCATTC CAAAAGCTTG TGTGTACTGT CAGGTTAGAC AAGCCAAGCT 
    CGCATTGCTC AATTACTTCT ACTCTCAGAT CAGCAAGAGA GAGGGGAAAC 
    AGTTGGGACA GTTACTAGAT GAAGATCCGG CATTGATGGA CCGGAGACTA 
    GAGTGCGCGA AGAGGCTAGA GTTATACAAG AAAGCAAGAG ATGAGATTGA 
    TGCTGTTGCT TGGGTAAGAT GATAAAACCT AAAAGTGTGT TTCTGGTGAT 
    GGTTTTAGAG AACTATAAAT TCGTCTGTTG TTTAAGTTCG TTGACTATGT 
    CTTTGTATGT ATGTATATGA TCATCAGACC CTATTGAGAG AGACTTGAGA 
    CGTTTTGTAA T

    Gene models with high sequence identity

    1. AT3G60190.1 [+] show detail - DYNAMIN-like 1E
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Dynamin, GTPase region, conserved site 0
    FPrintScan Dynamin, GTPase domain 1.4e-58
    FPrintScan Dynamin, GTPase domain 1.4e-58
    FPrintScan Dynamin, GTPase domain 1.4e-58
    FPrintScan Dynamin, GTPase domain 1.4e-58
    FPrintScan Dynamin, GTPase domain 1.4e-58
    FPrintScan Dynamin, GTPase domain 1.4e-58
    superfamily P-loop containing nucleoside triphosphate hyd 5.6e-46
    HMMSmart Dynamin, GTPase domain 2.5e-110
    HMMSmart Dynamin GTPase effector 1.4e-34
    Gene3D no description 2.3e-103
    ProfileScan GTPase effector domain, GED 22.539
    HMMPfam Dynamin central region 5.2e-70
    HMMPfam Dynamin, GTPase domain 2.8e-55
    HMMPfam Dynamin GTPase effector 3.5e-20
    HMMPanther DYNAMIN 3.6e-285
    HMMPanther DYNAMIN 3.6e-285

    See the detailed result >

    AT3G60190.1

    Model type
    Protein coding
    Short Description
    DYNAMIN-like 1E
    Curator Summary
    At3g60190 encodes Arabidopsis dynamin-related protein 1E, DRP1E, also known as EDR3, ADL4 and ADL1E, which is 624 amino acid residues long, has a predicted mass of 69.8 kDa and a pI of 7.5. Dynamin-related protein 1E belongs to a plant-specific subclass of dynamin-related proteins (DRP1), consisting of five members in Arabidopsis (A, B, C, D, E). This class is characterized by having an N-terminal GTPase domain, a central
    Computational Description
    DYNAMIN-like 1E (DL1E); FUNCTIONS IN: GTP binding, GTPase activity; INVOLVED IN: response to cadmium ion, vesicle-mediated transport, defense response to fungus; LOCATED IN: mitochondrion, plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Dynamin GTPase effector (InterPro:IPR003130), Dynamin, GTPase domain (InterPro:IPR001401), Dynamin, GTPase region, conserved site (InterPro:IPR019762), GTPase effector domain, GED (InterPro:IPR020850), Dynamin central region (InterPro:IPR000375); BEST Arabidopsis thaliana protein match is: DYNAMIN-like 1D (TAIR:AT2G44590.3); Has 2915 Blast hits to 2753 proteins in 324 species: Archae - 2; Bacteria - 53; Metazoa - 1058; Fungi - 869; Plants - 577; Viruses - 0; Other Eukaryotes - 356 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR