F24018

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24018

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24018

Determination of introduced cDNA(s)

  • RAFL09-35-H19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-35-H19 - Resource: pda17701

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-35-H19 - full reading 
    GAACCAGAAG AGAGAGAGAG AGAAAAAAAA AGAAAGAAAC TCAAATTTCT 
    CAAGTAAATC CAAGAGAGAG AAAGAGAGAA GGAAAAAGAT CTATCTTTTT 
    TCCTCTGAGA GAGAGCAAAA ATGGTGGAAG TGATACCAAA ACATATCAAA 
    GATGTTTGGG ATAGGTGGAA CATAAGAGGA GCAGTCATTC TAAGTCTTAC 
    CCTTCAAGCC ATTCTCATTT GCTTCTCTCC TCTAAGGAAA CGTACACCAA 
    GAAGGCTCTT GATCGTGCTT GTTTGGTCCT CTTATCTCTT AGCAGATTGG 
    TCTGCTAATT TCGCTGTTGG TCTTATCTCC AAGAATCAAG GTAAAGATCT 
    CAAACCTGAT GACCCTCCAC AGGACAAAAA GGTAATGGCT TTATGGGCAC 
    CATTCTTGCT CTTGCATCTT GGTGGACCAG ACACTATCAC AGCTTTCGCG 
    CTTGAAGATA ACGCTCTCTG GCTACGACAT GTCTTTGGGC TTGTCTTTCA 
    GGCAATTGCT GGTGTCTATG TGGTTGTCAT GTCTCTGCCC AATAGCCTTT 
    GGGTGGTTAT AGTCTTAGTG TTTGTTTCTG GGACTATAAA GTATCTGGAG 
    AGGACAACGG CTCTGTATAG TGCAAGTTTG GACAAGTTTA GGGACTCTAT 
    GATTCAAGCA CCAGATCCAG GACCAAACTA CGCCAAGCTC ATGGAGGAGT 
    ACAAGGCCAA GAAAGAGGCA AGACTTCCCA CCAAGATCGT TCTGATTGAT 
    GAGCCTGACA AAGAAAATAG GCCTAAGAAG TTAGAGCATC CAGCATTAGC 
    TTCGAAGAAA AGAAAAAAAG ATTTGACCGA TCTTGAGATT GTTCAGTATG 
    CTTACAAATT CTTCAACACA TTCAAGGGCC TTGTAGTCAA CCTTATCTTC 
    AGCTTCAGGG AGCGTGACGA GAGCCTAGAG ATCTTTGAGA ATTTAAATGA 
    TCCAGAGGAA GCTTTGAGGA TCATTGAGAT TGAGCTCGGC TTTCTCTATG 
    ATGCTCTATT CACCAAGATC GCGATTCTTC ATACCGGTAT TGGAACTGTC 
    TCACGGGTCT TTGCTTCTGG TACCCTTGTG GCTGCATTCA TCATTTTTCA 
    TAAGAAACCT AACAAAGGCA CAGATTTTCA TGGAGCTGAT GTCGTAGTTA 
    CTTATACGCT GTTTGCAGTT GGCCTAGTTT TGGATTTCAT ATCCATCCTT 
    TTGTTCCTGT TCTCAGACTG GACATGTGCT GCATACAGTA GTTTGAAGGA 
    CGATCCGGAT GAGCTTCAAT CATGGCAAGA GAGATGTTTT AACTGGTTAC 
    TTAAATTCAG AAAGCTGCGT TGGACGCCGC AAGAGTGCCA CAAGACTGGT 
    ATGCATAAGT GTACCAAAGA AGGTTTGAAA CCGTGTATCA TGAAAGGTGC 
    TGATAAGAAG GAAGGTGGCA ATAAGAATGA AGGTGGCAAT AAGAAGGAAG 
    GTGACGATAA GAAGGAAGCT GCTGATAAGT GTTCATTGGT AGATAAGCAT 
    GACGTTCTCA CAACGCGTTT CTTCCTTCGG AGGTGGAGTG GAAGCATCAA 
    CGTTTTTAAC TTTATAGCGT ACGCCACAAA AGCAGATGTA GAGAGGATCC 
    ACGACGCCAG AGGTAGTTTC CGCCGCTACT CATGGAAGAT CATAACTTTT 
    CCATTCAAAA AACTCAACTT CGTCATAAAG AAAATTTTTG GATCGATTGT 
    CAAGTTGATC AATGAAGTGC ACAGACGGAT CAGCCACGAA GTCAATGCGT 
    TATCAAGAAA GCATCTTTGG GCTCGTCGTT TTCTTTACCC TATCTATTTC 
    GAGTTCATAT CCCGCATCCC TCACTTCATC AAATCAGTGT GGGATATCCT 
    CAGTGAGTTC TTTGACATCT CGGATACGCT TGATATGGTC CACAAGACAC 
    TATTTGTACA TGGAGAGCCC ATGACGAGAG AATTGTGGAA GTTCATCTTC 
    GAAGAGCTGA AAAACAAATC AAAGTATGGA GACAGTCCTG AAAATGCCAA 
    GAGGATATCT TTGGCTCGGG GAGAATGGAC TTTAAGAGAG AACCTGCCGG 
    TGGATGCAGA ACGTGAAAAA CTGGTACGCT ATGTCACAAA GGTCGATTAT 
    GATCAGAGTC TTTTGATGTG GCACATCGCA ACCGAGCTCT GTTACCAACA 
    ACATGAGAAA GAGACTATCC CAGAGGGTTA TGATGAACAA CGCAAGCATT 
    ACAGTAACCG CGAGTTCAGC AAAATCATCT CAGACTACAT GATGTATCTC 
    CTGATCTTGC AACCCGGTCT GATGTCCGAG GTTGCTGGAA TTGGGAAGAT 
    CAGATTCAGA GACACATTGG CTGAAACTCA CAAGTTCTTC CAGAGGAGGC 
    ATATCGAGAA CGATAGAAGC GTGGAGACAG CCACCCTAAA TATTCTGGAC 
    GTCGAAAGTG AAATTGAACC AATGGGAGTG AAGGGAGATC GAAGCAAGTC 
    TGTATTGTTT GACGCGAGCA GGCTAGCCAA AGACCTTGCA GAGATGGAGA 
    AGACACACAA CAAAGATAAA TGGGAGATAC TGAGTAAAGT GTGGGTGGAA 
    CTTCTCTGTT ATGCAGCCTG TCATTGCGAC TCTACGGCTC ACGTGGAGCA 
    ACTCAGCAGA GGCGGAGAGC TCATAAACTT CGTGTGGCTT CTAATGGCTC 
    ACTTCGGACT AACAGATCAG TTCCAGATCA ACAAAGGAGA TGCCAGAGCC 
    AAACTCATCA TAGGCAAGTG AGAGTGAGGA AGAACAACAT TCCCCGTAAT 
    CTAAATTCGT TCTGCTTTTG TATTTCTTTC TACTTTCTTC TGCTCAAAAC 
    AATGAACTCT TCTTTTCTGC ATAAAGATGT GACATTTGTA AGCTTTTTGT 
    GATGAAAATT ATCCCATTTA TCCTTTTTAT ATTCCAACAA GAGTCATGAC 
    GAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G45470.1 [+] show detail - Protein of unknown function (DUF594)
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G45470.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function (DUF594)
    Computational Description
    Protein of unknown function (DUF594); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF594 (InterPro:IPR007658); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G45460.1); Has 1360 Blast hits to 854 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1360; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR