F24218

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24218

Determination of introduced cDNA(s)

RAFL05-15-F09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-F09 - Resource: pda17090

full reading [+] show sequence

CCCCGGATAA CCTTCTTCTT CTTCTTTTTG TATATGTATG AAGCAGCTTT 
TTGTGAATGA ATCTTCGAAA TAGGTTAAAG AAACAAAAAT GGAGACCAAA 
GAATTCGACT CTTACAGTGA GCGCAAAGCT TTCGACGAGA CGAAAACAGG 
TGTGAAAGGT CTCATTGATG CTCACATCAC TGAGATTCCT CGAATTTTCT 
GTCTCCCTCA AGGTTCCTTA TCCGACAAGA AACCTTTTGT TTCTACCACT 
GATTTTGCGA TCCCTATCAT CGACTTCGAA GGCCTCCACG TCTCCCGTGA 
AGATATCGTT GGGAAGATCA AAGACGCTGC ATCGAATTGG GGATTCTTCC 
AGGTGATCAA TCATGGTGTT CCTTTAAACG TTCTTCAAGA GATTCAAGAT 
GGAGTTCGTA GGTTTCATGA GGAAGCTCCT GAGGTTAAGA AAACCTACTT 
CACTCGTGAC GCCACTAAAA GATTTGTCTA CAATAGTAAT TTCGATCTCT 
ATAGTTCTTC TTCATGTGTT AACTGGAGAG ACTCTTTCGC TTGTTACATG 
GCTCCTGATC CTCCAAACCC TGAGGATCTC CCTGTGGCTT GCAGGGTTGC 
TATGTTCGAA TACTCAAAGC ATATGATGAG ATTAGGTGAT TTGCTCTTTG 
AGCTTCTCTC AGAAGCTCTT GGTTTGAGAT CTGATAAGCT TAAAAGCATG 
GATTGCATGA AGGGTTTGCT TTTGCTCTGC CATTATTATC CTCCATGTCC 
ACAACCTGAT CTAACCATCG GCACAAATAA TCATTCAGAC AACTCCTTCC 
TCACCATTCT TCTCCAGGAC CAAATCGGTG GTCTTCAAAT CTTTCATCAA 
GACTGTTGGG TCGATGTCTC TCCTATTCCA GGGGCTCTAG TCATCAACAT 
GGGAGATTTC TTGCAGCTAA TAACGAATGA CAAAGTCATA AGTGTGGAGC 
ACAGGGTGCT AGCGAACAGG GCAGCTACAC CGAGGATATC AGTAGCTAGC 
TTTTTCAGCA CAAGTATGCG TCCGAATTCA ACTGTTTATG GACCAATCAA 
AGAGCTTCTC TCTGAAGAAA ACCCTTCAAA ATACAGAGTC ATCGACTTGA 
AAGAATACAC AGAGGGATAC TTCAAGAAAG GCCTCGATGG AACATCGTAT 
CTGTCGCATT ACAAGATATG AAAGAAAAAA ACAATTGAAA GAGTAAATCA 
TCTCAAGTTT ATTGTAAGAT ATTGGTTCGT TTCATGCATC TATTGGGTTC 
AGGTACTAGT CCAATTGTCA GATCTTGACA AATAAGTAAA CCATTTCCTT 
TGTACCAAAA ACAAAAACAA CAAAGAAAGG TGTGTGTGTG TGTGTGTGTA 
TAATTTTAGT GAATGCTTTA AATTGGGAAT AAAAAAA

Gene models with high sequence identity

AT1G04350.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Oxoglutarate/iron-dependent oxygenase	2.3e-23
Gene3D	no description	5.1e-93
HMMPanther	1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE	2.5e-185
HMMPanther	IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL	2.5e-185
superfamily	Clavaminate synthase-like	7.5e-91

See the detailed result >

AT1G04350.1

Model type: Protein coding
Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Curator Summary: encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase
Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT5G59540.1); Has 8112 Blast hits to 8080 proteins in 977 species: Archae - 0; Bacteria - 1066; Metazoa - 116; Fungi - 819; Plants - 4883; Viruses - 0; Other Eukaryotes - 1228 (source: NCBI BLink).
Link: InterPro Scan - TAIR