F24230

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24230

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24230

Determination of introduced cDNA(s)

  • RAFL11-11-C06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-11-C06 - Resource: pda09199

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-11-C06 - full reading 
    CTGCCTTAAA AATAAATCAC AGTCTCGCTC GCGTCTTTCC TCAAACCTCT 
    CTGTCTCTTC TTCTTCCTCG CCTCGTCTAC GCAATAATAC TACTCTTATA 
    TCACAAAATC TCCACGAAAG CGCTACTCGA AGATCTGTCT TTTCAGGTCG 
    TTTATGTATT TTCTCTTGAA GGAAGAGATT AGCCACTAAT ACAAAATGTC 
    TGGGTCAACA AAAGTATTGG ATCCTGCGTT TCAAGGAGTG GGGCAGAAAC 
    CAGGTACTGA AATCTGGAGA ATCGAAAATT TTGAGCCAGT CCCAGTACCA 
    AAGTCTGAAC ATGGAAAGTT CTATATGGGA GATACCTACA TTGTCTTGCA 
    GACCACACAG AATAAGGGTG GCGCTTATCT ATTTGATATA CATTTTTGGA 
    TTGGTAAAGA TACAAGCCAG GATGAAGCTG GAACAGCAGC TGTCAAGACA 
    GTTGAACTTG ATGCAGCTCT TGGAGGCCGA GCTGTCCAAT ATCGTGAAAT 
    TCAAGGTCAT GAATCTGACA AATTCTTGTC TTACTTCAAG CCTTGCATTA 
    TACCACTAGA GGGTGGTGTT GCGTCTGGAT TTAAAAAACC GGAGGAGGAG 
    GAGTTTGAAA CCCGGCTGTA TACCTGCAAA GGAAAACGTG CTGTCCACTT 
    GAAGCAGGTT CCTTTTGCAC GCTCATCTCT GAATCATGAT GATGTGTTTA 
    TCTTGGACAC CAAGGAAAAG ATTTATCAGT TTAATGGTGC AAATTCAAAT 
    ATCCAAGAGA GAGCTAAAGC GTTGGTAGTC ATTCAATATT TGAAAGACAA 
    GTTTCATGAA GGAACTTCTG ACGTTGCTAT TGTTGATGAT GGAAAATTAG 
    ATACAGAATC AGATTCTGGC GAGTTCTGGG TCCTCTTTGG GGGGTTTGCT 
    CCAATAGCAA GGAAAGTTGC GAGTGAGGAT GAAATTATTC CGGAGACAAC 
    TCCGCCTAAG CTTTATAGTA TCGCTGATGG TCAGGTGGAA TCTATAGACG 
    GCGATTTGTC CAAATCTATG CTAGAAAACA ATAAATGCTA CCTTTTGGAC 
    TGCGGTTCTG AGATCTTTAT CTGGGTTGGC CGAGTAACTC AAGTGGAAGA 
    GAGAAAAACT GCTATCCAAG CTGCTGAGGA TTTTGTTGCT AGTGAAAATA 
    GGCCAAAGGC AACACGCATA ACCCGTGTTA TTCAAGGTTA TGAGCCCCAT 
    TCTTTCAAGT CTAACTTTGA CTCTTGGCCA TCAGGCTCGG CAACTCCTGC 
    TAATGAAGAA GGACGAGGAA AAGTCGCTGC ATTACTTAAG CAACAAGGTG 
    TTGGGTTAAA GGGCCTGTCA AAAAGCACAC CAGTGAATGA GGATATTCCA 
    CCATTGCTTG AAGGAGGTGG AAAGTTGGAG GTTTGGTACA TTGATGCCAA 
    CTCCAAGACT GTTCTATCCA AAGATCATGT CGGAAAACTT TATTCTGGGG 
    ACTGCTATCT GGTCCTTTAT ACCTACCATT CTGGTGAAAG GAAAGAAGAC 
    TACTTCTTGT GCTGTTGGTT TGGAAAGAAT AGTAATCAGG AGGATCAAGA 
    AACAGCAGTT CGTCTAGCGA GCACAATGAC AAATTCGTTG AAGGGAAGAC 
    CAGTGCAGGC CCGTATATTT GAGGGTAAAG AGCCTCCACA ATTTGTTGCA 
    CTTTTTCAAC ATATGGTTGT CCTTAAGGGC GGTTTGAGCT CTGGTTACAA 
    AAATAGTATG ACAGAGAAAG GTTCGTCAGG CGAAACCTAC ACGCCGGAAT 
    CAATTGCACT TATTCAAGTA TCTGGAACTG GAGTTCACAA TAATAAGGCT 
    CTACAAGTTG AAGCGGTGGC AACTTCTTTG AACTCCTATG ACTGCTTCCT 
    TCTGCAATCG GGTACTTCCA TGTTCCTTTG GGTTGGAAAC CATAGTACGC 
    ATGAGCAGCA GGAACTGGCT GCTAAAGTTG CTGAATTCTT AAAGTCAGCC 
    TGGGACTACT ATCAAGCACG CAAAAGAGGG AACAGAGAGC TCATCCTTTT 
    GGTTTGCACT TGGGGGAAAA CAGAACTTCA CCAGCAAGAA AGTTTCCTCT 
    GAGACTGTCA GGGATCCTCA CTTGTTCTCC TTTTCCTTCA ACAGAGGAAA 
    GTTTCAGGTT GAAGAGATTC ACAACTTTGA TCAAGATGAC CTCTTGACGG 
    AGGAAATGCA TTTACTAGAT ACTCATGCTG AAGTTTTTGT CTGGGTTGGT 
    CAATGTGTGG ACCCTAAGGA AAAACAAACT GCCTTTGAGA TTGGCCAAAG 
    ATACATAAAT CTGGCTGGTT CGCTGGAAGG CTTGTCTCCA AAAGTTCCAT 
    TATACAAAAT CACTGAGGGA AATGAACCGT GCTTCTTCAC CACTTATTTT 
    TCATGGGATT CTACTAAAGC TACTGTGCAA GGGAATTCCT ACCAGAAGAA 
    GGCAGCATTA TTACTTGGTA CACACCACGT TGTGGAGGAT CAGTCTAGCA 
    GTGGGAACCA AGGACCAAGG CAAAGAGCTG CTGCTTTAGC TGCCTTGACT 
    TCTGCCTTTA ATTCTTCTTC TGGGAGAACA AGCTCTCCGA GCCGAGACAG 
    ATCAAATGGA AGTCAAGGGG GTCCAAGACA AAGGGCTGAA GCTTTAGCCG 
    CCTTAACATC CGCATTCAAT TCTTCACCAT CATCAAAGTC ACCTCCCCGA 
    AGATCAGGAT TGACAAGCCA GGCGTCACAA AGAGCAGCAG CAGTGGCTGC 
    TCTTTCCCAA GTTCTCACTG CTGAGAAGAA GAAATCACCT GATACCAGCC 
    CTTCTGCTGA AGCAAAAGAT GAGAAGGCTT TCTCAGAAGT GGAGGCTACC 
    GAAGAAGCTA CTGAAGCCAA GGAAGAAGAG GAAGTGTCAC CTGCAGCAGA 
    AGCGAGTGCT GAGGAAGCAA AACCAAAGCA GGATGATTCT GAAGTAGAAA 
    CAACTGGAGT AACTTTCACC TACGAACGAC TACAAGCCAA ATCTGAGAAA 
    CCCGTGACAG GGATTGACTT CAAACGCAGA GAGGCTTACC TGTCTGAGGT 
    AGAGTTCAAG ACTGTATTTG GGATGGAGAA AGAATCATTC TACAAATTGC 
    CTGGATGGAA ACAAGACTTA CTGAAGAAGA AATTCAACTT ATTCTAAGGA 
    TTCTCCAAAA AAAATTAGCA GGTGGAAACA TCACAAACAT CCTTAGATCT 
    CATGATCCTC CATGTCAGAT ATATACTAAG AGCAACATGC CATTGTGTTA 
    TTTGGTTATG TAGTGACCTC AGCGCCGCAG CTATGAAGAC AATGAACAGT 
    TTCTTGTGTT TTTCTTCCTT CAATTTTACT CTTTTATTGT TTTGGTTTTT 
    CAATATATTT CTTCTTTCTC ATGGGTGGGT TTTGGGTTTG ATTCTTCATA 
    TTCTTAACCA CAAAATGGTG TGTTATTGTA ATGATTGTTT TTTTGTCAAA 
    CATGCGTTCA TTTTTTGGGT CAGGACAGTT GTGTGGTGGT GGGTAGTAAA 
    TTCTTTGATC TGGATTGCAC ATTATTTTGA TTGTGTAAAA GAACAGTGTC 
    TACATGTAAA CTCATGAAAT TTCAATATAT TGGTGTTGGA TTCGTTTG

    Gene models with high sequence identity

    1. AT3G57410.1 [+] show detail - villin 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Villin headpiece 19.938
    HMMPfam Gelsolin domain 8.5e-16
    HMMPfam Gelsolin domain 5e-10
    HMMPfam Gelsolin domain 2e-14
    HMMPfam Gelsolin domain 2.6e-11
    HMMPfam Gelsolin domain 1.9e-08
    HMMPfam Villin headpiece 1.4e-16
    HMMPfam Gelsolin domain 0.00011
    Gene3D no description 1.6e-46
    Gene3D no description 3.3e-23
    Gene3D no description 6.9e-23
    Gene3D no description 9.6e-39
    Gene3D no description 2.8e-12
    Gene3D no description 1.5e-21
    Gene3D Villin headpiece 1.5e-16
    Coil coiled-coil 0
    HMMSmart Gelsolin 1.5e-25
    HMMSmart Gelsolin 2.8e-24
    HMMSmart Gelsolin 6.6e-25
    HMMSmart Gelsolin 2.6e-18
    HMMSmart Gelsolin 1.2e-05
    HMMSmart Gelsolin 6.2e-18
    HMMSmart Villin headpiece 6.2e-18
    superfamily Actin depolymerizing proteins 2.9e-33
    superfamily Actin depolymerizing proteins 5.9e-27
    superfamily Actin depolymerizing proteins 7.3e-27
    superfamily Actin depolymerizing proteins 2.4e-23
    superfamily Actin depolymerizing proteins 2.8e-15
    superfamily Actin depolymerizing proteins 1.4e-24
    superfamily Villin headpiece 4.5e-22
    HMMPanther VILLIN 1-4 1.4e-143
    HMMPanther Gelsolin 1.4e-143
    HMMPanther VILLIN 1-4 0
    HMMPanther Gelsolin 0
    FPrintScan Gelsolin 3.3e-33
    FPrintScan Gelsolin 3.3e-33
    FPrintScan Gelsolin 3.3e-33
    FPrintScan Gelsolin 3.3e-33
    FPrintScan Gelsolin 3.3e-33
    FPrintScan Gelsolin 3.4e-17
    FPrintScan Gelsolin 3.4e-17
    FPrintScan Gelsolin 3.4e-17

    See the detailed result >

    AT3G57410.1

    Model type
    Protein coding
    Short Description
    villin 3
    Curator Summary
    Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.
    Computational Description
    villin 3 (VLN3); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 2 (TAIR:AT2G41740.1); Has 7542 Blast hits to 2948 proteins in 413 species: Archae - 0; Bacteria - 496; Metazoa - 2427; Fungi - 350; Plants - 307; Viruses - 25; Other Eukaryotes - 3937 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR