F24315

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24315

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24315

Determination of introduced cDNA(s)

  • RAFL16-46-G17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-46-G17 - Resource: pda19783

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-46-G17 - full reading 
    GTTGGATCCA ACAAATCCTC AGCAAGATTC TCCAGTCTCT TACCAAAGTC 
    TTTCATGGCC GTCCTGTATT CATCAGACAC ATCTGAAATG TCATTGAGAT 
    TGGATTGAGG GAGGTGACGA ACGTAGAAAG TGCTTTCCCA ATCGACATCT 
    TCGACTTCTG TCTCAAGATT ATCCAAACCT TTGGACTTGA GCATGTCATT 
    GAACTTTTGT TCTTGGCATG TCTTGTAATG GTCCTTTGTC ATCTTCTCGA 
    TCTTGTCCAT TAAGTCATGT GGTAATCCAT GGTTCACTAT CTCAAAGAAG 
    CCCCAATTCT CACAAGCTTC ATTGATTAGA GCCATGGTTT GGTCTCTCTC 
    TTCCCCATTG AGCTTGGACA AGTCTACTAC TGGAAACTTC ATGCTCTTCT 
    CCATCTTTCT TTCTCTCTCT CTTCTTCGAA AGTAATCTAT TTGAAGTTAC 
    AAGTTGTGTA TTTGTTAATT GCTTTCAGGT TCTCGAGAAC CGGTCTCCGA 
    CTTTGCTCCA TCAAGTTGCT CTGTTGTTTT AGTCGGAAAC CAAAGAAAAC 
    CGCATAAAGA TTGTTACTCT GACTCCGCGA TTTCTCTAGA CATAAATAGT 
    GAGAAGTATT CACCACGTAG TGTACTAAAC ACTTTATCAA GAGATTCACT 
    TAGCTCTTCA GGCGATGATG CTTCAAGCTT CAATGGTTCA ATGGTCTCTT 
    CTAGCTTCGC TTCGCCTTCA GACAAACCGA AGCATAAGTC AATCTCTCCT 
    TACAAATTCA TATCTTCTCT TATCATGAAT TCTCCTCTGA GGAAATGGAG 
    AGGAAGTGAG ACTAAGAACA AGCCCAAACC TCAGCCTCTA ATTCAATGCT 
    TCACTTACAA CGAGATTTCA AAGGCCACAA ATGATTTTCA CCAAGGGAAT 
    ATAGTAGGCA TAGGAGGCTA CTCTGAAGTG TACAGAGGAG ATTTATGGGA 
    TGGAAGAAGA ATAGCAGTGA AGAGATTAGC CAAGGAGAGT GGTGACATGA 
    ACAAGGAGAA AGAGTTTCTT ACGGAACTTG GCATCATAAG TCATGTCTCT 
    CATCCCAACA CTGCTCTTCT CTTAGGTTGT TGTGTTGAGA AAGGTCTTTA 
    TCTTGTCTTC AGATTCTCCG AGAATGGAAC CTTGTACTCT GCGCTGCACG 
    AGAATGAGAA TGGGTCGTTA GATTGGCCTG TACGGTACAA AATTGCGGTT 
    GGAGTTGCTC GAGGGCTTCA TTATCTTCAC AAACGCTGCA ACCACCGGAT 
    CATTCACCGC GACATTAAAT CTTCCAATGT TTTACTTGGA CCTGATTACG 
    AACCGCAGAT AACTGATTTT GGATTGGCCA AATGGTTGCC TAACAAATGG 
    ACTCACCATG CGGTTATACC GGTTGAAGGA ACGTTTGGTT ATCTAGCTCC 
    AGAGTCCTTA ATGCAAGGAA CCATCGACGA GAAAACCGAC ATCTACGCAT 
    TCGGCATTCT CCTTCTAGAG ATCATAACTG GTCGAAGACC GGTTAATCCC 
    ACTCAGAAAC ACATTCTCTT ATGGGCAAAG CCGGCGATGG AGACAGGTAA 
    CACAAGTGAG TTGGTTGATC CGAAATTGCA AGATAAGTAC GACGACCAAC 
    AGATGAACAA GCTAGTCCTT ACAGCTTCAC ATTGTGTTCA ACAATCTCCG 
    ATATTACGAC CAACCATGAC TCAGGTATTG GAGTTGCTTA CAAATGGGAA 
    CGAGGCTGAG ATTGCAAAGA GCTGGAGAAT GCCTAAGGAT ATGACTAATG 
    ACGATGATGA TAATAATGAA TGGGATGATT ATTCTATGAT TTTCGGATAT 
    GATGTTCCTT CAGATTCTTC TTTTTAATAT TTTTGTTTAT ATCTAATATT 
    TACTGATTGC TTTTGTTTAG GTTTTTCTTT TTCATTCTTT TATATGTTAT 
    GAGATCTTTA ACGTTATGTA TCAAGAATTC ACAACTAATA GAAATAAGTT 
    ACTTTACCAA AAAAAAAA

    Gene models with high sequence identity

    1. AT5G57670.2 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 6.7e-26
    HMMSmart Tyrosine-protein kinase, catalytic domain 1.7e-16
    HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5e-52
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 5e-52
    HMMPanther SERINE/THREONINE PROTEIN KINASE-RELATED 8.5e-213
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 8.5e-213
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 1.2e-75
    superfamily Clavaminate synthase-like 4.4e-20
    HMMPfam Serine/threonine-protein kinase-like domain 2.3e-45
    Gene3D no description 6.1e-16
    Gene3D no description 1.3e-49
    Gene3D no description 7.3e-18
    ProfileScan Protein kinase, catalytic domain 36.499

    See the detailed result >

    AT5G57670.2

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G18890.1); Has 113420 Blast hits to 112131 proteins in 3664 species: Archae - 114; Bacteria - 13552; Metazoa - 41580; Fungi - 9353; Plants - 32095; Viruses - 456; Other Eukaryotes - 16270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR