F24320

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24320

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24320

Determination of introduced cDNA(s)

  • RAFL09-81-M20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-81-M20 - Resource: pda12376

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-81-M20 - full reading 
    ACCAATAACA CACATTCACT ACATGCACAA GCACGTATAT ATATAAATGT 
    TCATGAAGGA AGAAGCTTTA ACAGAGAGAA CAACTAAAAT AGCCTAAGCC 
    TCAAATTTAA TCGCTATTTA GTTTCTAATT TTGGGTTAAA AGAAATTCGG 
    GTTTCAATTA ATTCGAAAGA GCGGTCACGA CGTTTCTTAG AGAATCGTCT 
    TCTTCATCTT CTTCGTGAAC TTTTTGTTTT CTCCTTTTTT TGATTTTCAC 
    CGCCGGAGAT TTTTGTATTT TTCCGATTAT TCGCCGGCGG TTTAGAGATA 
    ATGAAGGGGA GGATATCAAA AATAGGAAGC TATGCAATCT CGTCTTCCAT 
    TAGAGATCAG CATCAGCAAC CTTGTATTTC TTGTACTACT TTCAATATCC 
    TTGCTCCGAT CTATAAACGT CTCTCTCACA AGGATCAAAG TCTTCGTGAA 
    AGTGATAATC GAGCGTATTG GCTTGGAAGG AATCATCGAA TCATTGATTG 
    GTTATTGTAT GAGAGATCTT CAATCATATG TTTACAGGAG TTTTGGGTAG 
    GCAATGAAGA GCTTGTTAAT TTGTACGAGA AGAGACTTGG AGACGCTGGT 
    TATCTAAGTT ACAAGCTTGG TCGTACTAAT AATCGTGGTG ATGGTTTGCT 
    TACGGCTGTT CATAAGGACT ATTTTAGAGT TGTGAACTCG AGGGATTTGC 
    TTTTTAATGA TTGTGGTGAT CGAGTTGCTC AGTTGCTACA TGTAGAATTA 
    GTTCCTCCTT ACTCTCAGTA TGATGCTCAT CAAGAAGTTT TGATTGTGAA 
    TACTCATTTG TTGTTTCCTC ATGATTCAAC ATTGTCCATA GTAAGATTGC 
    AGCAGGTATA TAAGATTCTT CAGTATGTAG AATCTTACCA GAAGGAAGTT 
    AATCTCAGTC CCATGCCTAT TATTCTTTGC GGAGATTGGA ACGGAAGTAA 
    GCGAGGACAT GTCTACAAGT TTCTCAGGTC ACAGGGTTTT GTGTCGTCTT 
    ACGATACTGC TCATCGGTAC ACAGACTCAG ATGCTCACAA GTGGGTAAGC 
    CACCGGAATC ATCGGGGTAA CATATGCGCT GTCGATTTCA TATGGCTTTT 
    AAATCCAAAT CGGTATAGAA AGCTGCTAAA AACAAGTTGG AGCGAGGCAG 
    TCTTTGGCAT GTTCAGGTAT CTACTGAGAA GAGCTTCACT AACAGCTGAA 
    GATGCTTTTG CTTTTCTAAA AACTGACAAT GATGGTGACC ACATTACATT 
    CATGGGCTTC TGTGAGACTC TTCGGCAGCT CAATCTAACA GGTCACTGTA 
    ATGGACTCAC GACAAAAGAG ATCAAAGATT TGTGGACTCA AGCTGACATT 
    GATGGAAACG GTCTTCTAGA TTATAAGGAG TTTCAGCAAA GAATATGGAA 
    CCAAACCTGG TCAGAACAAA GAGATGCAGA GGACGGAGAA GCAAAAGGTA 
    ACCAAGAACA AACCGTTGGA TTCAGTGTCA AAAACGCAGT TTTGTTTCCT 
    CCTGAAGTTG AAAAAGGAAT GTGGCCAGAA AATTACTCTC TATCAGATCA 
    CGCGAGACTC ACTGTTGTAT TCTCACCCAT AAGAATGCCT TGCTCTCAAT 
    TGGTTTCATG ACAAAACACA CTCACCAAAC AAACTTTAGC TTCTTCCATT 
    TTTAAGAGAC CTCTGAGTTT TGGTGTCCCC TTACAGAGAA ACTTCGCTCT 
    GTCTCTCCAT TGGATCGGCT TGACCGCTCT CACGTTGCGG TTCCTGCGTT 
    GGGTGGGAAG AAGAGAGAAA GGGGGACATA GGTCTATAAA TTTTTACTGT 
    GTACAAAAAC ATGTAAACTA AATATATTAG CTTCATGTAC AAAATAATGT 
    CGTAGTAGAG ATTTAAGAAG CAGCTTTTTG CA

    Gene models with high sequence identity

    1. AT5G54130.2 [+] show detail - Calcium-binding endonuclease/exonuclease/phosphatase family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPanther CARBON CATABOLITE REPRESSOR PROTEIN 4 3.5e-17
    ProfileScan EF-HAND 2 8.488
    superfamily Endonuclease/exonuclease/phosphatase 8.8e-22
    superfamily EF-hand 4.7e-09
    Gene3D EF-hand-like domain 0.00079
    Coil coiled-coil 0
    HMMPfam Endonuclease/exonuclease/phosphatase 5.3e-16

    See the detailed result >

    AT5G54130.2

    Model type
    Protein coding
    Short Description
    Calcium-binding endonuclease/exonuclease/phosphatase family
    Computational Description
    Calcium-binding endonuclease/exonuclease/phosphatase family; FUNCTIONS IN: calcium ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Calcium-binding endonuclease/exonuclease/phosphatase family (TAIR:AT1G02270.1); Has 395 Blast hits to 395 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 160; Fungi - 17; Plants - 147; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR