F24429

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24429

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24429

Determination of introduced cDNA(s)

  • RAFL04-18-H05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-18-H05 - Resource: pda00625

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-18-H05 - full reading 
    AAAAGGAGAA AGCTTGAAAC GCCGCTTCTT CTTCTTCTTC TTCCACTGTC 
    GTTCTCTCTG TAAATCGCTT CTTCAATCAT CTCTGTGGAT TTGTCTCTAT 
    TCATAACTTG GTGAAGAAGA TGTTGACGGA AGAGGAGCTC AAAAGATTGT 
    ACAGAATCCA GAAGACGTTG ATGCAGATGT TAAGGGATCG TGGATATTTT 
    ATCGCGGATT CTGAACTTAC GATGACTAAA CAACAGTTTA TTAGGAAACA 
    TGGTGATAAC ATGAAAAGAG AGGATCTTGT TACTCTTAAG GCTAAGCGAA 
    ATGATAATAG TGATCAGCTC TATATATTCT TCCCTGATGA GGCGAAAGTT 
    GGTGTGAAGA CGATGAAAAT GTACACGAAC AGGATGAAAT CAGAGAATGT 
    GTTCAGAGCT ATTTTGGTTG TGCAACAGAA CTTGACCCCG TTTGCTCGAA 
    CTTGCATTAG TGAGATCTCT TCTAAGTTTC ATCTGGAAGT TTTCCAGGAG 
    GCGGAAATGC TAGTGAACAT TAAAGAACAT GTTCTTGTTC CTGAGCATCA 
    AGTTCTTACC ACTGAAGAGA AGAAAACTTT ACTGGAGAGA TACACAGTGA 
    AGGAGACACA GCTTCCAAGG ATCCAAGTGA CTGATCCAAT CGCAAGATAC 
    TTTGGACTAA AACGTGGGCA AGTCGTGAAG ATCATTCGTC CGAGTGAAAC 
    GGCTGGTCGT TATGTTACCT ATCGTTATGT TGTATAAGCC AAAGCAAAAG 
    GCTTTTGTGG ATTGTAATGC GAATTGAACG CTGAGAGTTG TGAAACATAA 
    GAGTAATGCT TTTGTACTAA ACCAAACTGA TGACTGTGTT TTATTTTTGT 
    TTGTCCGATA GGAGAAATTA AAGCTTGAAA CAACTTATTT GTATT

    Gene models with high sequence identity

    1. AT3G22320.1 [+] show detail - Eukaryotic rpb5 RNA polymerase subunit family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan RNA polymerase, subunit H/Rpb5, conserved site 0
    HMMPanther DNA-DIRECTED RNA POLYMERASE II 7.5e-97
    HMMPIR DNA-directed RNA polymerase, RPB5 subunit 8.5e-137
    superfamily RNA polymerase, Rpb5, N-terminal 2e-40
    superfamily RNA polymerase, subunit H/Rpb5 C-terminal 9.9e-32
    Gene3D RNA polymerase, Rpb5, N-terminal 1.8e-41
    Gene3D RNA polymerase, subunit H/Rpb5 C-terminal 2.7e-28
    BlastProDom RNA polymerase, subunit H/Rpb5 C-terminal 1e-31
    HMMPfam RNA polymerase, subunit H/Rpb5 C-terminal 4e-38
    HMMPfam RNA polymerase, Rpb5, N-terminal 1.3e-27

    See the detailed result >

    AT3G22320.1

    Model type
    Protein coding
    Short Description
    Eukaryotic rpb5 RNA polymerase subunit family protein
    Curator Summary
    Non-catalytic subunit common to DNA-dependent RNA polymerases I, II, III and IV; homologous to budding yeast RPB5.
    Computational Description
    NRPB5; FUNCTIONS IN: DNA-directed RNA polymerase activity, DNA binding; INVOLVED IN: transcription; LOCATED IN: DNA-directed RNA polymerase II, core complex, DNA-directed RNA polymerase IV complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase, Rpb5, N-terminal (InterPro:IPR005571), RNA polymerase, subunit H/Rpb5 C-terminal (InterPro:IPR000783), DNA-directed RNA polymerase, RPB5 subunit (InterPro:IPR014381), RNA polymerase, subunit H/Rpb5, conserved site (InterPro:IPR020608); BEST Arabidopsis thaliana protein match is: RNA polymerase II fifth largest subunit, C (TAIR:AT5G57980.1); Has 1046 Blast hits to 1046 proteins in 368 species: Archae - 260; Bacteria - 0; Metazoa - 162; Fungi - 216; Plants - 118; Viruses - 20; Other Eukaryotes - 270 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR