F24501

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24501

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F24501

Determination of introduced cDNA(s)

  • RAFL04-20-D23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-20-D23 - Resource: pda02377

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-20-D23 - full reading 
    ATTTCCGTGA ATGTTGTGAT TAGCTTATTA TTATCTTCGT TGCCCAAAAA 
    CTTAAAAGAT CCAAACTTCG AACAATTTTG GTGTCTGCTA TACAGAATCC 
    AAATCCACCT TCTCCGATTA AAAATCCCTT CTCTTTCGAT CATGGATGTG 
    TCTAAAGTTG TCAGCTTTTC CCGGAATTTC GCCGTCTTGG TCAAAGTCGA 
    AGGCCCTGAT CCAAAGGGAT TGAAGATGAG GAAGCATGCT TTTCATCAAT 
    ACCATTCTGG CAATGCAACA CTTTCAGCTT CTGGGATCTT GCTTCCAAGA 
    GATATTTTTT TGAGTGGTGA GGTCGCTGCT AAGGTTCTGT TTGAAGCTGG 
    TCAGGACATG GCCCTGGTTT TGACCGTTGC ATCTGTTGTT GAGCCATTCT 
    TAACATTAGG TCACAGAACT AGTAGTAGTA TCTCTCAGGA TCCGGTGAAG 
    CTTATTCCGG GTGCTATGAT TGAGATTATG GTGGAGGGTC AGCTAAAGTC 
    AGAAAAGGAA TCTCCTTTTT GGGTTCCTGC GCAACTTCTT TCGCTGGTTG 
    ATGTCCCTGT ATCTTCTGCT GCACTTCAAT CTCTTATTGA AGCTTCTTCT 
    GGTTCGAAAG ATTCTGGATG GGATATTGGT TGGTCTTTGG TTTCTGCTGC 
    TAATGGTTCT CAGCCTTCAA TCAATATTGA ACATTACAGC AAGCCCTTGA 
    TGCAACTTGA TGAGCCACAC AACGCTAACT TCATGGCCAA GTCTGCCACT 
    CGAATGGCTA TTCTAGGAGT CCCCTTAAGT TTACTGGGTC AACCAAGCAT 
    GAATTTTGCT TCATCAAGTA GCAAGGGTGA TACACTTGTA GCACTAGGCT 
    CTCCCTTTGG AATCCTTTCA CCTGTTAACT TTTTTAACAG CGTATCAACT 
    GGTTCCATTG CGAATAGCTA TCCTTCTGGA TCCCTAAAGA AGTCACTGAT 
    GATAGCTGAT GTTCGATGTC TCCCTGGAAT GGAAGGGGCT CCGGTGTTTG 
    CTAAGAATGG GCACTTAATT GGCATTTTGA TTAGACCACT AAGGCAAAAG 
    AATAGCGGCG TTGAAATTCA GCTGGTGGTT CCATGGGGAG CAATCACAAC 
    TGCTTGCAGC CACTTGCTGC TTGAGGAACC ATCTGTAGAA GGAAAAGCAA 
    GTCAGTGGGG GAGCGAAGTC CTAAGTGTTA AATCAGATGC TAGTATTCCT 
    GCACAAGTGG CTATTGAGAA GGCGATGGAA TCAGTTTGTC TTATTACGGT 
    CAATGATGGT GTTTGGGCTT CTGGTATTAT TCTTAACGAA CATGGTCTCA 
    TACTAACAAA TGCTCACCTG CTTGAGCCGT GGAGGTATGG AAAAGGTGGT 
    GTATATGGTG AAGGATTTAA ACCCTATGTC TTAGGAGCCG AGGAATTTTC 
    TTCCACGGGA AGTAAATTTT GGGAACAGAA GAGTCAAACA TTGCCACGGA 
    AAGCTCCACG AAATCATTAT TCGTCTGTTG GAGAGAACAT CAGGGAATAC 
    AAACACAATT TCCTTCAGAC TGGGCATAGA GACATACGTG TGCGTTTGTG 
    TCACCTAGAT TCTTGGACTT GGTGTCCTGC AAACGTGGTC TATATTTGCA 
    AGGAACAATT AGATATTGCC TTACTGCAGC TAGAATATGT CCCTGGAAAG 
    CTCCAACCTA TTACTGCCAA TTTTTCTTCT CCTCCTTTGG GTACAACAGC 
    GCATGTTGTT GGACATGGAC TCTTCGGACC AAGATGTGGG CTTTCTCCTT 
    CTATTTGTTC TGGAGTTGTA GCAAAGGTAG TTCACGCAAA GAGGAGATTG 
    AATACGCAAT CCATTTCTCA AGAAGTCGCA GAGTTCCCCG CTATGCTCGA 
    AACAACAGCT GCTGTGCATC CTGGTGGCAG TGGTGGTGCT GTTCTCAATT 
    CAAGTGGCCA TATGATTGGA CTTGTTACCA GCAACGCAAG ACATGGAGCG 
    GGGACTGTTA TACCGCATCT CAACTTCAGC ATCCCATGTG CAGTCTTGGC 
    ACCAATCTTC AAGTTTGCAG AAGATATGCA GAACACAACG ATCCTTCAAA 
    CACTTGATCA ACCTAGCGAA GAACTCTCAT CCATTTGGGC TTTGATGCCA 
    TCACTATCAC CAAAGACTGA GCAGTCTCTA CCCAATCTGC CTAAGTTACT 
    CAAAGATGGT AATAACAAAC AAACGAAAGG ATCTCAGTTT GCCAAGTTCA 
    TTGCAGAGAC CCAAGACATG TTTGTAAAGC CGACCAAGCT TTCCCGTGAT 
    GTGATCCCTA GCAAGTTATG ACAAGATTGG CTTCTTTGCA GAATTTGTGC 
    CTTCTTTTAC TCCTTTTGCT GGAGTGGCAA CTTTAACTTT TGTATAGATA 
    GAGAAATTAC AAAATGTTGC TGCTGTTTCT GGATTATTCT GTTTGTAACA 
    TATATAAAAC CTTATAATAC GTTTTGGC

    Gene models with high sequence identity

    1. AT1G28320.1 [+] show detail - protease-related
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Serine/cysteine peptidase, trypsin-like 3.8e-27
    superfamily Serine/cysteine peptidase, trypsin-like 6.4e-09
    Gene3D no description 5.9e-05
    Gene3D no description 1e-05
    HMMPanther SERINE PROTEASE-RELATED 7e-161

    See the detailed result >

    AT1G28320.1

    Model type
    Protein coding
    Short Description
    protease-related
    Curator Summary
    Mutants in this gene are defective in the processing of pre-glyoxysomal malate dehydrogenase (pre-gMDH) to gMDH.
    Computational Description
    DEG15; CONTAINS InterPro DOMAIN/s: Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003); BEST Arabidopsis thaliana protein match is: DegP protease 1 (TAIR:AT3G27925.1); Has 3917 Blast hits to 3716 proteins in 1340 species: Archae - 34; Bacteria - 3021; Metazoa - 72; Fungi - 16; Plants - 139; Viruses - 0; Other Eukaryotes - 635 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR