F24502

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24502

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24502

Determination of introduced cDNA(s)

  • RAFL06-12-A07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-12-A07 - Resource: pda03092

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-12-A07 - full reading 
    GACTCATTGA GAATCAAAAA TCAAAATGTC TTCTCATACT GCAACTAAGT 
    ATGATGTTTT CCTAAGTTTC AGAGGGCATG ACACTCGCCA CAACTTCATC 
    AGTTTTCTCT ACAAAGAACT GGTTCGAAGG AGCATTCGAA CCTTCAAAGA 
    CGACAAAGAG CTGGAGAATG GCCAGAGGTT TTCGCCGGAG CTCAAAAGCC 
    CCATCGAGGT GTCAAGATTC GCCGTCGTTG TTGTCTCAGA GAACTATGCT 
    GCGTCTTCTT GGTGTCTCGA TGAGCTCGTA ACGATCATGG ATTTCGAAAA 
    AAAGGGTTCC ATCACCGTGA TGCCCATCTT CTACGGCGTG GAACCGAATC 
    ATGTGAGGTG GCAGACCGGA GTACTCGCTG AACAGTTTAA GAAACATGCG 
    AGTAGAGAAG ATCCTGAGAA AGTTCTTAAA TGGAGGCAAG CATTGACCAA 
    TTTTGCGCAA CTCTCCGGCG ATTGTTCAGG TGATGATGAC TCGAAGCTGG 
    TGGACAAAAT TGCTAACGAG ATATCAAACA AGAAGACGAT TTATGCAACA 
    ATATGATGAG TCCAGACGAG AAGAAGAAGA AGAAAGGAGA AGGCCCATAA 
    GGACTCGCAT GCCCAATCCA AAGTATTCCC AACACTAAGT CATTTTACTT 
    AGTCTCTGTT TTCGATTTAG TTACAATAAG CAAGGAGTCT TCCACGATTA 
    CAGTTTCCAT CTTTTCCAAG TTTGTAGAAG TTGTTACTCC ACGTTTGTTT 
    CCATGTTGTT TCTAGTTGTA AGGAGGTGTA CTCCAAGTAT TTATATCAAT 
    GAAAAACAAA ACAAAAGGTA GTCT

    Gene models with high sequence identity

    1. AT1G72930.1 [+] show detail - toll/interleukin-1 receptor-like
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Toll-Interleukin receptor 1.6e-42
    Gene3D no description 2.5e-06
    HMMPfam Toll-Interleukin receptor 1.4e-34
    ProfileScan Toll-Interleukin receptor 27.799
    Coil coiled-coil 0
    HMMSmart Toll-Interleukin receptor 2.7e-39

    See the detailed result >

    AT1G72930.1

    Model type
    Protein coding
    Short Description
    toll/interleukin-1 receptor-like
    Curator Summary
    Toll/interleukin-1 receptor-like protein (TIR) mRNA,
    Computational Description
    toll/interleukin-1 receptor-like (TIR); FUNCTIONS IN: transmembrane receptor activity; INVOLVED IN: signal transduction, defense response, innate immune response; LOCATED IN: intrinsic to membrane; CONTAINS InterPro DOMAIN/s: Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana protein match is: Toll-Interleukin-Resistance (TIR) domain-containing protein (TAIR:AT1G72910.1); Has 1768 Blast hits to 1683 proteins in 89 species: Archae - 0; Bacteria - 94; Metazoa - 0; Fungi - 0; Plants - 1674; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR