F24508

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24508

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24508

Determination of introduced cDNA(s)

  • RAFL09-33-O20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-33-O20 - Resource: pda08225

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-33-O20 - full reading 
    AGCTTCTAAC GTCACGGCTC AGGAGGGCTA CTTCATCGGT TCGATTGGGA 
    TTGCTCCTGA CCAAGTCTTT GCCACCGGGA TGTGCGCTCC AGGTTCTGAG 
    CGTGATGTTT GCTCTCTCTG TATCAGGTCC ACATCAGAGA GTTTACTACA 
    AAGCTGTCTG GACCAGGCAG ATGCTTTCTT CTGGTCAGGT GAAGAAACCC 
    TTTGCCTTGT TCGCTACGCT AACCGCCCCT TCTCTGGATT GCTCGTCATG 
    GATCCACTAG GAGCGATATT CAACACAGGA GAACTCAATA CGAATCAGAC 
    TGTGTTTGAT ATCGAGTGGA ATAATTTAAC TTCTAGTATG ATCGCCGGAA 
    TAACTTCTTC TTCATCAGGG GGGAACAATT CGTCTAAGTA CTACTCAGAC 
    GATATAGCTC TTGTGCCGGA TTTTAAGAAC ATATCAGCGT TGATGCAATG 
    CACACCAGAC GTTTCGTCAG AGGATTGTAA CACTTGCTTA CGGCAAAACG 
    TTGTCGACTA TGATAATTGT TGCCGTGGGC ACCAAGGCGG CGTTATGTCA 
    AGGCCAAACT GCTTTTTCCG ATGGGAAGTG TATCCCTTCT CTGGTGCTAT 
    TGATCAGATT AATTTACCAA AGTCACCGCC GCCTTCAGTT ACATCCCCGT 
    CTCCTATAGC CAACATAACC AAGAATGATA GTAGAATATC AGGAGGAAAA 
    ATCGCAGCAA TAGTTGTTGT TACTGTTGTT ACAATAATAT TGGTTGTTTT 
    AGGCTTTGTT ATTTCCAATA GAAGAAAGCA AAAGCAAGAA ATGGATCTTC 
    CAACGGAATC TGTTCAATTT GATTTAAAGA CAATTGAATC GGCGACAAGC 
    AACTTTTCCG AACGTAACAA GCTTGGTAAA GGTGGATTCG GTGAAGTTTA 
    CAAGGGTATG CTCATGAATG GCACTGAAAT TGCGGTGAAG AGATTGTCGA 
    AAACATCAGG ACAAGGTGAA GTAGAGTTCA AGAACGAGGT TGTTGTTGTT 
    GCAAAGCTTC AACACATAAA TCTTGTTAGA CTTCTCGGGT TTTCGCTACA 
    AGGAGAAGAG AAGTTACTCG TCTATGAGTT TGTTTCAAAC AAAAGCCTCG 
    ATTATTTCCT CTTTGATCCT ACGAAGAGAA ATCAGTTGGA CTGGACAATG 
    CGACGCAATA TCATCGGTGG CATTACTCGA GGGATTTTAT ATCTTCATCA 
    AGATTCGCGG CTGAAGATCA TACATCGTGA CCTCAAAGCG AGTAACATTC 
    TCTTAGATGC GGATATGAAT CCAAAAATCG CTGATTTCGG AATGGCAAGG 
    ATCTTTGGAG TGGACCAAAC TGTTGCCAAT ACAGGAAGAG TGGTTGGAAC 
    CTTTGGTTAC ATGTCTCCTG AGTATGTGAC ACATGGCCAA TTCTCAATGA 
    AATCAGACGT CTATAGTTTT GGAGTATTGA TTCTTGAGAT CATTAGTGGC 
    AAAAAGAATA GCAGCTTCTA CCAAATGGAT GGCTTAGTTA ACAATTTAGT 
    CACATATGTC TGGAAACTTT GGGAGAACAA ATCATTGCAT GAGCTCTTAG 
    ATCCCTTTAT CAACCAAGAT TTCACAAGCG AGGAAGTCAT TAGATACATT 
    CATATTGGAC TGTTATGTGT TCAAGAAAAT CCTGCAGATC GACCAACAAT 
    GTCTACGATT CACCAAATGC TCACAAACAG CTCAATCACT CTGCCTGTGC 
    CTCTGCCTCC TGGATTTTTC TTTAGGAACG GACCAGGATC GAACCCGGGT 
    CAGTCGAACA GCAAGTCTTT TGCTTGTTCT GTAGATGAAG CAACAATCAC 
    GGACGTTAAT CCTCGTTGAA AATTCAGCAT TTGGTTTTTT CTTGTTTCCA 
    CAAACGTCTA TCATTTATTT ATTGTCCGTT TATGAAAAAG TTTACAAAGG 
    GTCATTTTTT CAGGTTGAAG ATTCG

    Gene models with high sequence identity

    1. AT4G23260.1 [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 18
      E-value: 0; Score: 99.84

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Protein kinase-like domain 1.7e-83
    HMMPfam Serine-threonine/tyrosine-protein kinase 3.6e-47
    HMMPfam Protein of unknown function DUF26 7.3e-09
    HMMPfam Protein of unknown function DUF26 9.4e-16
    HMMSmart Serine/threonine-protein kinase domain 1.5e-33
    HMMSmart Tyrosine-protein kinase, catalytic domain 7.2e-34
    ProfileScan Protein kinase, catalytic domain 38.633
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    Gene3D no description 4.9e-23
    Gene3D no description 2.1e-52
    HMMPanther SERINE/THREONINE RECEPTOR-LIKE PROTEIN KINASE 1.9e-281
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 1.9e-281

    See the detailed result >

    AT4G23260.1

    Model type
    Protein coding
    Short Description
    cysteine-rich RLK (RECEPTOR-like protein kinase) 18
    Curator Summary
    Encodes a cysteine-rich receptor-like protein kinase.
    Computational Description
    cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (CRK18); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: kinases;protein kinases (TAIR:AT4G23250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR