F24514

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24514

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24514

Determination of introduced cDNA(s)

  • RAFL06-83-A13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-83-A13 - Resource: pda07715

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-83-A13 - full reading 
    AAACCCGTAC GGCCTCTTTA GAGTTTCACC TTTGTGTCTC TCTGAAACTG 
    CAACAAAGCT TGAAGCGATA GGGTTTATTC AAGCTTCACT CAAACCAGTC 
    GCTAAATTTC GACATCTTTA TTCACATATC TATAGATTCA AGCTTTGTGA 
    TTTGCCATTC GGGTTTCAGA TTCGTGTTGG TAATTCAATT TCTGAATCCT 
    CTGCTCCTAA AGAGAAGAAT CTGAGATCAG CAATGGAAAC GGATCTCAAT 
    GATTATACTG TCATTAAGGA AGGAGAAGCT GAGGTTCTTA TGCACAAGAA 
    GAACCAAGTC TTCTTCAACA AAGCTCAGGT TAACAATAGG GACATGTCTA 
    TTGCTGTGCT AAGGGCATTT ATAATCAAAC GCAAGCAAGA GCATGAGGCT 
    ATGTTATCTA AAAGAGCTAG ATCATCTGGG AAAGTGGTTG AGAAGGATGT 
    CTCTGAAACT TCCAAGGAAG AAACTCCTAC TGAAAACGGT GACGATAATG 
    GAAAAACCAA TGGAGAACAC GAAGTAACAA CTCAGGATGG ACCAAAGGAA 
    GCTGCTAAGA CCGCATATGA ATCTGCACGA AGGGAACTCA AACCACCAAG 
    AGTGCTTGAG GCCCTGTCAG CTTCAGGGCT ACGGGCTTTG AGGTATGCTC 
    GTGAAGTTGA AGGAATTGGT CAAGTTGTGG CTTTAGATAA TGACCCAGCA 
    TCGGTTGAAG CCTGCCAGAG AAACATTAAG TTCAATGGTT TGATGTCTAC 
    TTCAAAGGTG GAGTCACATC TTACTGATGC TCGTGTTCAC ATGCTCAGCC 
    ACCCAAAAGA TTTTGATGTG GTTGATCTTG ACCCATATGG TGCGCCGTCT 
    ATTTTCCTTG ACTCAGCTGT TCAATCAGTT GCCGATGGTG GTTTGCTGAT 
    GTGTACAGCA ACTGACATGG CAGTGTTATG TGGAGCTAAC GGCGAGGTCT 
    GCTATTCCAA ATATGGCTCT TATCCACTGA AAGGGAAATA TTGTCATGAG 
    ATGGCTTTGA GGATCCTCCT CGCCAGCATC GAGAGCCATG CAAATCGCTA 
    CAAGCGGTAT ATTGTTCCTG TTCTATCGGT CCAAATGGAT TTCTACGTTC 
    GTGTTTTTGT CCGCGTCTAC ACTTCGGCGA GTGCAATGAA GAATACTCCA 
    CTAAAGCTCT CATATGTCTA CCAATGCATT GGTTGTGATT CCTTTCATCT 
    TCAGTCTGTT GGAAGATCTC TCCCTAAGAA TAACAGTGTG AGATATCTAC 
    CTGGAGTTGG TCCTGTTGTT CCTCAGGATT GCACTCATTG TGGAAAGAAA 
    TATAATATGG GTGGACCAAT ATGGTCTGCT CCAATCCACG ATCAAGAATG 
    GGTGAATTCG ATACTAAACG GTGTTAAATC CATGAAAGAC AGATATCCTG 
    CTTACGACCG AATTTGCGCT GTTCTTACCA CAATCTCAGA GGAATTGCCA 
    GATGTTCCTC TCTTTTTGAG CCTGCATAGT CTCTCTGCAA CGCTAAAATG 
    TACTTCACCA TCAGCTGCTT TGTTTCGATC AGCGGTAATC AATGCAAAGT 
    ACCGTGTCTC TGGGTCCCAT GTGAACCCGC TTGGGATTAA AACTGATGCT 
    CCAATGGAGA TTATCTGGGA CATCATGCGG TGCTGGGTGA AAAATCATCC 
    CATAAAGCCG CAATCACCTG AACATCCTGG AAGTGTGATT CTATCTAAAG 
    AACCATCTCA TCAGGCTGAC TTTTCGCGCC ACGTCGGTTC GCTTAGTAAA 
    GCACAGGCGA AGAAAGTAGC CCGGTTTCTA CCAAACCCAG AGAAGCATTG 
    GGGTCCCAAG ATAAGGGCAG GTCGTACAAT CACAAGCAAA CATGTATCGC 
    TTCTTGGTCA TGAAGCAGTA AACGGTCATC TCAATAACAA TCATAAAGAA 
    GCAGGAGACG AAGAAGAAGA AGAAGAAGAA GAAGAGCCCG AAGAAGATAT 
    CATCGAGGGT GAGCCAGAGC TCAAACGCCA AAAGACAACA GAAGATTTTG 
    CCTCAACATC ATAGGGCGAA TGTTTACACA AGAATTTTAT ATTTTTGTTT 
    GCAAAAGATT TTCTCTTTTC TTTTCTTAAA CATTTGTTAT CACAGTTCTG 
    CGTTTTTGAT CCTAGCACTT CACCATTTTT GCAGACTTCT ACAACAAACA 
    ACTTATAAGT CTCTATTGGA TTCTTCAGAT CTGTTAGAGA CTATTTAAAA 
    AAACCTTGTA ATGTGTAAGT TTTCATCAGT AACACTTTTC TATGAATCTT 
    TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT5G15810.1 [+] show detail - N2,N2-dimethylguanosine tRNA methyltransferase
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 7.2e-13
    HMMPfam N2,N2-dimethylguanosine tRNA methyltransferase 2e-117
    Gene3D no description 7.4e-05
    HMMPanther N2,N2-dimethylguanosine tRNA methyltransferase 9.9e-133
    Coil coiled-coil 0
    HMMTigr N2,N2-dimethylguanosine tRNA methyltransferase 5.4e-86

    See the detailed result >

    AT5G15810.1

    Model type
    Protein coding
    Short Description
    N2,N2-dimethylguanosine tRNA methyltransferase
    Computational Description
    N2,N2-dimethylguanosine tRNA methyltransferase; FUNCTIONS IN: RNA binding, tRNA (guanine-N2-)-methyltransferase activity; INVOLVED IN: tRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: N2,N2-dimethylguanosine tRNA methyltransferase (InterPro:IPR002905); BEST Arabidopsis thaliana protein match is: N2,N2-dimethylguanosine tRNA methyltransferase (TAIR:AT3G02320.1); Has 1017 Blast hits to 963 proteins in 359 species: Archae - 255; Bacteria - 70; Metazoa - 198; Fungi - 150; Plants - 103; Viruses - 0; Other Eukaryotes - 241 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR