F24550

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24550

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24550

Determination of introduced cDNA(s)

RAFL09-65-D06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-65-D06 - Resource: pda17801

full reading [+] show sequence

GCACACACAC TACCACAAAC AATGGCCACC GTCGCTAACT TCTTAGCCAA 
ACCAATCTCC ACCGTAGTCC CACGGCCATC CTCCGCCGTT GCTTCGACCT 
CCTCCTTCGT ATTCTTTAAC CATAAAACTA ATCCTCTGTT CCGGAGGAAA 
AACCTCCCGA AAAGATTATT CTCCGCCGTG AAAATAAAGG CTGGAGCGGC 
GTCTCCGGGA AAGGTGGGTA CACCACCGGC GAATGACGAG AAGGTACAAA 
AGATTCACAG CGGAGAGGAA TTCGACGTAG CGTTGAAAAA TGCGAAGAGC 
AAACTCGTGG TTGCAGAGTT TGCTACGAGT AAGAGTGATC AGAGTAATAA 
GATATATCCG TTTATGGTGG AACTGAGCAG GACCTGTAAC GACGTCGTTT 
TCTTGCTCGT CATGGGTGAT GAATCTGACA AGACCAGAGA ACTCTGTCGG 
AGAGAGAAGA TTGAGAAAGT TCCTCACTTT AGCTTTTATA AGAGCATGGA 
GAAAATACAC GAGGAAGAAG GTATTGAACC GGACCAGTTA ATGGGAGACG 
TTCTATACTA CGGAGACAAC CACTCTGCGC GGTGCAGCTG CACGGCCGAC 
CTGACGTGGA AAAGCTGATC GACGAGAATC GCACTGGAGG CAAGCTGATC 
GTGCTTGACG TTGGTCTAAA ACATTGTGGT CCTTGCGTTA AAGTGTATCC 
GACCGTGCTG AAACTGTCCC GGTCAATGTC CGAGACAGTC GTATTCGCTA 
GAATGAACGG TGACGAGAAC GATAGTTGTA TGGAGTTTCT CAAGGACATG 
AATGTTATCG AAGTTCCAAC TTTCTTGTTC ATTAGAGACG GCGAGATTCG 
TGGCCGTTAT GTTGGTTCCG GTAAAGGAGA ACTCATTGGA GAGATTCTTC 
GGTACTCAGG CGTTCGTGTC ACTTATTAAT TTGTATCAAA ACTTTAATTT 
TATTACATCT CACTTCAAAA AAGAATGAGT TTTTGGTCTT TGTCTGTACC 
ATCCGAAACC GGTTGATATG AAAGAAAAAA AACTCAAAAT AGTGTGATTC 
TTGATTATTT GATTTTGCTT TTGTGTTCTA ACTTTGAAGG CACGGAAACT 
TTGACGGATT TGAATATTTC CGTAAGGAAG AATGAGATGT TAATGATTTG 
TACCTACCCA ATGAAGATAT TGTATTATTC CCAATAAATA TATACACATT 
ATCACCAAAA AAAAAA

Gene models with high sequence identity

AT1G76080.1 [+] show detail - chloroplastic drought-induced stress protein of 32 kD
E-value: 0; Score: 99.83

InterPro Scan Digest

Program	Description	E-value
superfamily	Thioredoxin-like fold	1e-14
superfamily	Thioredoxin-like fold	1.3e-19
HMMPfam	Thioredoxin domain	3.1e-06
HMMPfam	Thioredoxin domain	4.6e-12
Gene3D	Thioredoxin fold	1.8e-12
Gene3D	Thioredoxin fold	4.5e-15
HMMPanther	Thioredoxin, core	1.9e-07
HMMPanther	THIOREDOXIN H-TYPE-RELATED	2.1e-14
HMMPanther	Thioredoxin, core	2.1e-14

See the detailed result >

AT1G76080.1

Model type: Protein coding
Short Description: chloroplastic drought-induced stress protein of 32 kD
Curator Summary: Encodes a thioredoxin localized in chloroplast stroma. Known as CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD).
Computational Description: chloroplastic drought-induced stress protein of 32 kD (CDSP32); INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT1G19730.1); Has 3263 Blast hits to 3026 proteins in 903 species: Archae - 63; Bacteria - 1344; Metazoa - 643; Fungi - 77; Plants - 661; Viruses - 3; Other Eukaryotes - 472 (source: NCBI BLink).
Link: InterPro Scan - TAIR