F24608

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24608

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24608

Determination of introduced cDNA(s)

  • RAFL05-18-A12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-18-A12 - Resource: pda17118

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-18-A12 - full reading 
    CCGGCTTTGT TACCGGAGCT CTGGACGGAG ATCCTTGTAC CGATTTGTGC 
    GGTGATTGGT ATCGCCTTTT CGCTTTTCCA ATGGTACGTT GTATCTCGCG 
    TGAAACTCAC CTCTGACCTC GGCGCATCGT CTTCCGGTGG AGCTAACAAT 
    GGGAAGAATG GATACGGTGA TTATCTAATC GAGGAAGAGG AAGGTGTTAA 
    TGACCAGAGT GTTGTCGCTA AGTGCGCTGA GATTCAGACT GCTATTTCCG 
    AAGGTGCAAC TTCATTCCTA TTCACGGAGT ACAAATATGT TGGTGTCTTC 
    ATGATTTTCT TTGCTGCTGT TATCTTTGTT TTCCTCGGCT CTGTTGAGGG 
    ATTCAGCACT GATAACAAGC CTTGTACTTA CGACACCACC AGAACCTGCA 
    AGCCTGCATT GGCTACTGCA GCTTTCAGTA CCATTGCTTT CGTGCTTGGT 
    GCTGTTACCT CTGTTCTATC TGGTTTCCTT GGGATGAAGA TTGCTACATA 
    CGCTAATGCT AGGACCACTT TGGAGGCGAG GAAAGGTGTT GGAAAGGCGT 
    TCATTGTTGC ATTCAGGTCT GGTGCTGTGA TGGGTTTCCT TCTTGCAGCG 
    AGTGGTCTAT TGGTGCTTTA CATTACTATC AATGTGTTCA AGATCTATTA 
    CGGAGATGAC TGGGAAGGTC TTTTTGAGGC TATTACTGGT TATGGTCTTG 
    GTGGGTCTTC CATGGCTCTC TTTGGCCGTG TTGGTGGTGG GATCTACACT 
    AAGGTTGCTG ATGTCGGCGC TGACCTTGTC GGTAAAATTG AGAGGAATAT 
    TCCAGAGGAT GATCCAAGAA ACCCAGCTGT CATTGCTGAT AATGTCGGTG 
    ACAATGTTGG TGACATTGCT GGTATGGGAT CTGATCTCTT TGGATCATAT 
    GCTGAAGCAT CATGCGCTGC TCTTGTTGTT GCCTCGATCT CATCTTTCGG 
    AATCAACCAC GACTTCACTG CCATGTGCTA CCCATTGCTC ATCAGTTCAA 
    TGGGAATCTT GGTTTGTTTG ATCACAACTC TCTTTGCCAC TGACTTCTTT 
    GAGATTAAGC TTGTCAAGGA GATTGAACCA GCATTGAAGA ACCAGCTCAT 
    TATCTCAACT GTTATTATGA CTGTTGGTAT TGCTATTGTG TCATGGGTTG 
    GCTTACCGAC CTCCTTTACC ATCTTCAACT TTGGAACACA AAAAGTTGTC 
    AAGAACTGGC AGCTATTCCT TTGTGTTTGT GTTGGTCTTT GGGCTGGACT 
    CATTATTGGT TTCGTCACTG AGTACTACAC TAGTAACGCC TACAGCCCTG 
    TGCAAGATGT TGCAGATTCA TGCAGAACTG GTGCAGCTAC CAATGTTATC 
    TTCGGCCTTG CTCTTGGTTA CAAATCCGTC ATTATTCCAA TCTTTGCTAT 
    TGCTATCAGT ATATTCGTTA GCTTCAGCTT TGCTGCTATG TATGGTGTTG 
    CTGTTGCTGC TCTTGGTATG CTCAGTACCA TTGCCACTGG TTTGGCAATT 
    GATGCTTATG GTCCCATCAG TGACAATGCT GGTGGTATTG CTGAAATGGC 
    TGGAATGAGC CACCGCATCC GTGAAAGAAC TGATGCTCTT GATGCCGCTG 
    GAAACACCAC TGCTGCTATT GGAAAGGGAT TTGCCATTGG CTCTGCTGCC 
    CTAGTCTCCT TGGCTCTCTT TGGTGCCTTT GTGAGCCGTG CAGGGATCCA 
    CACCGTAGAT GTTTTGACCC CTAAAGTTAT CATTGGGCTC CTTGTTGGTG 
    CCATGCTTCC TTACTGGTTC TCTGCCATGA CAATGAAGAG TGTGGGAAGT 
    GCAGCTCTTA AGATGGTTGA AGAAGTTCGC AGGCAGTTCA ACACCATCCC 
    TGGACTTATG GAAGGAACCG CAAAACCAGA CTACGCCACA TGTGTCAAGA 
    TCTCCACCGA TGCTTCCATC AAGGAAATGA TACCTCCTGG TTGCCTTGTC 
    ATGCTCACAC CTCTCATTGT TGGTTTCTTC TTTGGAGTTG AGACCCTCTC 
    TGGTGTCCTC GCCGGATCTC TTGTATCCGG TGTTCAGATC GCCATATCAG 
    CATCTAACAC TGGTGGTGCC TGGGACAACG CCAAGAAATA CATCGAGGCT 
    GGTGTATCAG AGCACGCAAA GAGCCTTGGA CCAAAGGGTT CAGAGCCACA 
    CAAGGCAGCT GTGATTGGAG ACACAATTGG AGACCCATTG AAGGATACTT 
    CAGGACCTTC ATTGAACATC CTCATCAAGC TCATGGCTGT TGAGTCTCTT 
    GTCTTTGCTC CCTTCTTCGC CACTCACGGT GGTATCCTTT TCAAGTACTT 
    CTAAACTCAA TCCGAGGGAA GAAGATGACG ATGATGAAGA AGAAGAAGAT 
    GATGATGGCG ATCGATTCTA AACTTTCTTT TTTACCATTC TTATTTTCGT 
    TTACCGTAGG TGGTTAAAAA ACCTTTTTTG TTGATGAGGC TCATTTAAAG 
    AACCAACCAA ATGATGTTTC TTTCTCTCAC TCTCTGTCTT TCTGTTTTCT 
    TTTTGTTCTG TTTAGAATTT AGAAATCCAC CAAGTATTCG GTCGAGACTT 
    GTTTTAGCCG TTACTTTCTG CTGCTTATAT TTCCTAAATT GGTTGTCTTC 
    TTCGAGACAT AATTGGAATC AAAAAAAAAA

    Gene models with high sequence identity

    1. AT1G15690.1 [+] show detail - Inorganic H pyrophosphatase family protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Inorganic H+ pyrophosphatase 0
    HMMPIR Inorganic H+ pyrophosphatase 0
    HMMPfam Inorganic H+ pyrophosphatase 0

    See the detailed result >

    AT1G15690.1

    Model type
    Protein coding
    Short Description
    Inorganic H pyrophosphatase family protein
    Curator Summary
    Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1.
    Computational Description
    AVP1; FUNCTIONS IN: hydrogen-translocating pyrophosphatase activity; INVOLVED IN: response to water deprivation, response to salt stress, establishment or maintenance of transmembrane electrochemical gradient, leaf development, auxin polar transport; LOCATED IN: in 10 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Inorganic H+ pyrophosphatase (InterPro:IPR004131); BEST Arabidopsis thaliana protein match is: Inorganic H pyrophosphatase family protein (TAIR:AT1G16780.1); Has 6470 Blast hits to 6448 proteins in 793 species: Archae - 67; Bacteria - 1322; Metazoa - 5; Fungi - 1; Plants - 304; Viruses - 0; Other Eukaryotes - 4771 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR