F24706

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F24706

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F24706

Determination of introduced cDNA(s)

  • RAFL11-09-L22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-09-L22 - Resource: pda12425

    full reading [+] show sequence

    Nucleotide sequence: RAFL11-09-L22 - full reading 
    AGAAACAATT GATCAGAGCT TTAAAGAAAA AGATGGAATT CACCGCAGAG 
    CAGCTAAGCC AATACAACGG CACCGACGAA TCAAAGCCGA TCTACGTCGC 
    AATCAAAGGC CGTGTGTTCG ATGTCACCAC CGGAAAATCC TTCTACGGCT 
    CCGGAGGCGA TTACTCGATG TTCGCCGGAA AAGACGCGAG CAGAGCTTTG 
    GGTAAGATGA GTAAGAACGA AGAAGATGTG TCTCCTTCTC TTGAAGGTCT 
    CACTGAGAAA GAGATCAATA CTCTTAATGA TTGGGAGACC AAATTTGAAG 
    CTAAGTATCC TGTCGTTGGC CGTGTTGTCT CTTAGGTCTC TCTTCTGAGA 
    TTGCACTATG TTATGTAACT ATTGTGTGTG AGGATCTTTG TGTTGTGTGT 
    TTTCTGATTT CGTGTTTGGA TCTGATCGTT TTGATACAAT TACCATAAGT 
    ACCAAATTAT CTATGAAATA AATCGGGGAT TTCGTGT

    Gene models with high sequence identity

    1. AT2G24940.1 [+] show detail - membrane-associated progesterone binding protein 2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Cytochrome b5 5.2e-35
    HMMPanther STEROID BINDING PROTEIN 1.6e-57
    HMMPanther MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-REL 1.6e-57
    Gene3D Cytochrome b5 2.4e-35
    Coil coiled-coil 0
    HMMPfam Cytochrome b5 3.3e-16

    See the detailed result >

    AT2G24940.1

    Model type
    Protein coding
    Short Description
    membrane-associated progesterone binding protein 2
    Computational Description
    membrane-associated progesterone binding protein 2 (MAPR2); FUNCTIONS IN: heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane steroid binding protein 1 (TAIR:AT5G52240.2); Has 1117 Blast hits to 1108 proteins in 214 species: Archae - 2; Bacteria - 37; Metazoa - 426; Fungi - 339; Plants - 201; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR