F25036

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25036

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25036

Determination of introduced cDNA(s)

  • RAFL02-09-J03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-09-J03 - Resource: pda00099

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-09-J03 - full reading 
    AGAGATACAA AGCAATAGAA CAACAAGAAC AAGAAAACAG AGAAAAAAAC 
    AATGGCTGCC TTGTCGGATA AGTTAGCGGA TGCTTACCAG AACGCAAGGC 
    CGAGATATCC GATCGATTGG TTCACGAAAC TTGCTGCTCG AACCGGTCAG 
    CACAAATCAG CTTGGGATGT TGGTACTGGC AACGGTCAAG CAGCTATTGG 
    TCTTGCAGAG TATTTCGAGA AAGTTACAGC AACCGACATA AACGAAGCAC 
    AGTTAAAACG AGCGGTAAAA CACGAAAGAA TCAGTTACCA TCACACTCCC 
    ACAACAATGT CCGAAGACCA AATGGTTGCT CTAGTCGGCG GAGATAACTC 
    CGTTGATCTA ATCGTGGCAG CACAAGCCGT TCACTACTTC GATCTCGCAC 
    CATTCTACAA CGTAGCAAAA CGTGTTCTTC GCAAAGAAGG AGGATTAATC 
    GCAGTTTTTG TCTACAACGA CATAATCATC TCTCCTGAAG TTGATTCCAT 
    CATGAAACGT CTTGTGGACT CCACGTTCCC GTTTAGAACT CCTGTAATGA 
    ATCTTGCTTT CGACGGTTAT AAAACGTTGC CGTTTCCGTT TGAAAGTATA 
    GGGATGGGAT CAGAAGGGAA GCCTATAATG CTTGACATTC CTCATAAGCT 
    ATCGCTTAAA GGGTTTATCG GTTTCTTGAG ATCGTGGCAG CCCGCAATGA 
    AAGCTAAAGA ACGTGGAGTT GAGCTTGTGA CTGAAGATTT GATCTCCAAA 
    TTTGAAGATG CTTGGGGTGA TGATGATGAT GTTAAAGATA TTTTCTACAA 
    AGCTCATATG ATTGTTGGAA AACTTTCGGC TTCAGATATA GAGCGGCATC 
    GAAAGAGATT TGATACGAAC TGCGTAGTTA CAACACTAAA GGATCATAAC 
    AACTCGGCTG TTATTGCTTC AGTGACTGCT GCTGCATTTG CTGGAGTGGC 
    GGCTTACTGT GCTTACTCTG CAAGGAAGAA CAGTTAGATC CTTTGAAGGA 
    CAAAGAAACG GTTTTCTGAA TCTAGTGAAT GAAATCTTTT TTATTTTACA 
    TGTTGACATG TTGTCATGTA TTTATTTATG TCATTGATAT GAGATGGTTA 
    AGTAATATCT AAAGATTTAA GAGTC

    Gene models with high sequence identity

    1. AT1G55450.1 [+] show detail - S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Methyltransferase type 11 1.1e-11
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.4e-20
    Gene3D no description 1.7e-13

    See the detailed result >

    AT1G55450.1

    Model type
    Protein coding
    Short Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
    Computational Description
    S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: response to salt stress; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methyltransferase type 11 (InterPro:IPR013216); BEST Arabidopsis thaliana protein match is: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (TAIR:AT3G54150.1); Has 1000 Blast hits to 995 proteins in 384 species: Archae - 6; Bacteria - 568; Metazoa - 69; Fungi - 129; Plants - 164; Viruses - 0; Other Eukaryotes - 64 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR