F25143

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25143

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25143

Determination of introduced cDNA(s)

  • RAFL03-06-J14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-06-J14 - Resource: pda00264

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-06-J14 - full reading 
    ACTTATGCTC TTCATATCAC ATACAACAAA CTCATATATA TAAAAACTTT 
    AACCTTCGTA TAGCAACGAT CTAGTAGAAA GCTTATACTA AAACTTTCTG 
    ATTCTCTTAA TATGGCGGAG GAGTTTAAAG CTACGGCATC GATTTGTGGT 
    GGCGGAGGTG GCGCGTGGTG GAACTCGCCA AGGAGCGTTA TGTCTCCTTC 
    GGATCATTTC TTGTCACCAT GCTTCGGAGC GGCTATCACT TCCAATGATT 
    TTAGCTCGCA AGAGAATCAT CTCAAATCTA GGATGACTTG TACGGACAAC 
    AACAACATCG TTTTCGGGCA GCGAGAGGCG GATTCTGACA GTGGAGGAAG 
    TACCGTGACG ATGGACTCGA CGTTGCAGAT GATGGGTCTA GGGTTTTCCT 
    CAAATTGTTC TTCAGATTGG AACCAAACCA TTTTACAAGA AGACTTAAAC 
    TCAAGCTTCA TAAGGAGCTC ACAAGATCAA GATCATGGCC AAGGATTCTT 
    ATCCACAACT ACTTCACCTT ATATACTTAA TCCAGCTTGT TCTTCATCTC 
    CATCAACTTC TTCGTCCTCA AGCTTGATAC GAACCTTTTA CGATCCCGAA 
    CCAAGTCCAT ACAACTTTGT CTCCACCACA AGTGGTTCAA TCAACGATCC 
    TCAACTTTCT TGGGCTAATA AGACAAATCC TCATCATCAA GTAGCTTATG 
    GACTAATTAA CAGCTTCTCT AACAACGCAA ACTCTCGACC CTTTTGGAAT 
    TCTTCATCAA CCACTAACTT AAACAACACG ACGCCGAGCA ATTTTGTAAC 
    CACTCCGCAG ATAATATCTA CTCGTTTGGA GGACAAAACC AAGAATCTGA 
    AGACAAGAGC TCAGAGTGAG TCTTTGAAGA GAGCAAAGGA TAATGAATCT 
    GCGGCGAAGA AACCGAGAGT CACCACGCCT TCACCGTTGC CAACTTTCAA 
    GGTGAGAAAA GAGAATCTAA GGGACCAGAT AACTTCATTA CAACAACTAG 
    TTTCACCTTT CGGAAAGACA GATACTGCAT CTGTTCTCCA AGAAGCTATA 
    GAGTACATCA AGTTCCTTCA CGACCAAGTC ACTGTTCTAA GCACTCCATA 
    CATGAAACAA GGTGCCTCGA ACCAACAACA ACAGCAGATA TCTGGTAAAT 
    CGAAGAGTCA AGATGAAAAT GAGAATCACG AACTAAGAGG ACATGGTCTA 
    TGTCTCGTCC CAATATCAAG CACGTTTCCG GTGGCTAACG AAACAACAGC 
    CGATTTTTGG ACACCAACGT TTGGGGGCAA CAATTTCAGG TGATTAAAGA 
    GAGAGGGTTG TGGTTGTCAA GACGGATGGG AACATATGCT AAATTCAGCT 
    TGGAGACTCT AAAGCATAAC AATAATTTTT AATGTATTTT CTTCTTCTTT 
    CAATATTTTA AGGGGGGTTT ATTGCTGAAT TTAGCATATA TGGGTTGTTT 
    TTATGTTGAA TAACCTTTTG TTCCTGTCAT TGTTCTTGAA TATATATATA 
    TACATATTTT TGTCGTTGGT

    Gene models with high sequence identity

    1. AT1G61660.1 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Helix-loop-helix DNA-binding domain 0.0071
    ProfileScan Helix-loop-helix DNA-binding domain 8.171
    superfamily Helix-loop-helix DNA-binding 2e-11

    See the detailed result >

    AT1G61660.1

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT3G20640.1); Has 1502 Blast hits to 1260 proteins in 110 species: Archae - 0; Bacteria - 97; Metazoa - 123; Fungi - 48; Plants - 982; Viruses - 0; Other Eukaryotes - 252 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR