F25349

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25349

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25349

Determination of introduced cDNA(s)

  • RAFL06-07-H08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-07-H08 - Resource: pda02836

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-07-H08 - full reading 
    ACTTCTTCAT CGCCGTCTGC ACAAAACCCT AATCTCACAA TCTCCTACGA 
    GATCTATCAG TCTCCACGAA GATGAAGGTT GTTGCCGCAT ACTTGCTCGC 
    TGTTTTGAGC GGAAAAGCTT CACCAACCAG TGCCGATATC AAGACTATCC 
    TTGGATCAGT TGGTGCTGAG ACAGAGGATT CTCAGATTGA GCTTTTGTTG 
    AAGGAAGTGA AAGGAAAAGA TTTGGCTGAG TTGATTGCTG CTGGAAGGGA 
    GAAGTTAGCT TCAGTGCCGT CTGGTGGCGG AGGTGGTGTT GCGGTTGCTT 
    CTGCTACATC TGGAGGTGGA GGAGGTGGTG GTGCTTCTGC TGCTGAGTCC 
    AAGAAAGAAG AGAAGAAGGA AGAAAAGGAA GAATCCGATG ATGACATGGG 
    TTTCAGTCTA TTCGAGTAAG CTGGTAGTAG CATGAAAAGT CCGGTTTTGT 
    TGTCCTCTTT TAATATTGTA ACCTTTTGAA ATCTATATGT TGTTGTTGTT 
    TAGTTTGTAT TCGATCATCT TTTTTAGACA TTGCTGAAAT TCTCAAGAGT 
    TTTTGACCCG AATGC

    Gene models with high sequence identity

    1. AT2G27710.1 [+] show detail - 60S acidic ribosomal protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P2 2.9e-63
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2.9e-63
    Coil coiled-coil 0
    HMMPfam Ribosomal protein 60S 5.7e-26

    See the detailed result >

    AT2G27710.1

    Model type
    Protein coding
    Short Description
    60S acidic ribosomal protein family
    Computational Description
    60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to cold; LOCATED IN: in 8 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT2G27720.1); Has 1875 Blast hits to 1874 proteins in 360 species: Archae - 31; Bacteria - 1; Metazoa - 679; Fungi - 442; Plants - 437; Viruses - 0; Other Eukaryotes - 285 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR