F25351

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25351

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25351

Determination of introduced cDNA(s)

  • RAFL09-90-F14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-90-F14 - Resource: pda08995

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-90-F14 - full reading 
    ATCATCATCA TCATCTCTTT CTTCTTCCAA AAGTCATAAT CATGTCAAAG 
    TCTCTAGCTG GATTGGCGGT TTTGGCCGCT CTTTTTATTG CGGTTGATGC 
    GTTTAGGCCT TCTGGTTAAC TAATGGTCAC GCTACATTCT ATGGAGGAAG 
    TGACGCTTCT GGAACAATGG GTGGAGCTTG TGGTTACGGA GATCTTTACT 
    CGGCGGGGTA CGGGACAATG ACGGCGGCGT TAAGCACGGC TCTGTTCAAC 
    GACGGAGCTT CTTGCGGAGA ATGCTATAGG ATAACGTGTG ATCACGCGGC 
    GGACTCACGG TGGTGCTTGA AAGGAGCTTC TGTGGTTATT ACAGCCACTA 
    ACTTTTGCCC ACCAAACTTT GCTTTGCCTA ACAACAACGG TGGTTGGTGC 
    AATCCGCCGC TTAAACATTT CGACATGGCA CAACCCGCTT GGGAAAAGAT 
    CGGAATTTAC AGAGGAGGAA TCGTTCCCGT CGTTTTCCAA AGAGTAAGCT 
    GTTACAAGAA AGGAGGAGTT AGATTCAGAA TAAACGGAAG AGACTACTTC 
    GAGCTAGTGA ATATTCAAAA TGTAGGAGGA GCAGGTTCTA TTAAATCTGT 
    ATCCATCAAA GGATCAAAGA CTGGTTGGTT AGCCATGTCT CGTAACTGGG 
    GAGCTAATTG GCAATCGAAT GCTTATCTAG ATGGTCAAGC TCTCTCTTTC 
    TCCATTACCA CTACTGATGG TGCTACTAGA GTCTTTCTCA ATGTTGTTCC 
    TTCTTCTTGG TCTTTTGGAC AGATTTATTC TTCCAACGTT CAGTTTTAAG 
    TTTTTTTTTT TTGTTTTGTA TGAAATATCA TTGGCAGTGG TCGCGCTTTG 
    AGTCTGTTTC TTTTCTCCCT GAGCGACCCG CCCTCTTTGT TTTTTTTATC 
    TTATGGTATG ATGGGTCTGT TAATACAAAA GACCCGATAT GATTTGAGGG 
    TATATGATTA TATGAAGTGT ATTGTATTTG AATGTTTCAG ACTCGAAAAA 
    GATTCTGTAG CAAAAGGAGT TTTAACACAT TTGTACTTGG TTTTGTTTAT 
    ATGAAGTTTG TTTTAGTTTT TTAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT1G20190.1 [+] show detail - expansin 11
      E-value: 0; Score: 99.81

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Expansin 45, endoglucanase-like 28.378
    ProfileScan Pollen allergen/expansin, C-terminal 21.821
    FPrintScan Expansin 5.7e-70
    FPrintScan Expansin 5.7e-70
    FPrintScan Expansin 5.7e-70
    FPrintScan Expansin 5.7e-70
    FPrintScan Expansin 5.7e-70
    FPrintScan Expansin 5.7e-70
    FPrintScan Expansin 5.7e-70
    FPrintScan Expansin 5.7e-70
    FPrintScan Expansin 5.7e-70
    FPrintScan Expansin/Lol pI 7.5e-43
    FPrintScan Expansin/Lol pI 7.5e-43
    FPrintScan Expansin/Lol pI 7.5e-43
    FPrintScan Expansin/Lol pI 7.5e-43
    FPrintScan Expansin/Lol pI 7.5e-43
    FPrintScan Expansin/Lol pI 7.5e-43
    HMMSmart no description 2.7e-55
    HMMPfam Pollen allergen/expansin, C-terminal 3.7e-26
    HMMPfam Rare lipoprotein A 7.4e-25
    Gene3D Pollen allergen, N-terminal 7.3e-38
    Gene3D Pollen allergen/expansin, C-terminal 1.7e-11
    superfamily Barwin-related endoglucanase 3e-42
    superfamily Pollen allergen/expansin, C-terminal 5.9e-33

    See the detailed result >

    AT1G20190.1

    Model type
    Protein coding
    Short Description
    expansin 11
    Curator Summary
    member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
    Computational Description
    expansin 11 (EXPA11); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A1 (TAIR:AT1G69530.4); Has 2193 Blast hits to 2189 proteins in 161 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 64; Plants - 2080; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR