F25403

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25403

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25403

Determination of introduced cDNA(s)

  • RAFL03-04-H03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL03-04-H03 - Resource: pda00119

    full reading [+] show sequence

    Nucleotide sequence: RAFL03-04-H03 - full reading 
    TCTCTTTCTC TCTGACTCTG AAAAAGATGA AGTGGAGAAG TTAATGTTCA 
    CCAACTTAAT ACTGCAAAGT CGAAATCTTT CTTTCTTCTT CTTTGCCTTC 
    TTTCAAGTGC TTTCCCTCTC TCATTCTCCT TCTTCCTCCT CTGTTTCTTT 
    GTTGTTCTAA ACTTAAAAAA AGATTGAAGT TGCAAGTAAC AGAGGAGCTG 
    TCTCAGATCT GGTTCTAAAG CGAGAGAAAG AGATTTTGAG TTGAGGAAAA 
    ATGAGTAAAG AAGAGTTCAT GAAGATCCAG ACTTGTGTTC TTAAAGTGAA 
    CATACACTGT GATGGCTGTA AGCAGAAAGT CAAGAAAATC TTGCAGAAAA 
    TCGAAGGTGT TTTCACGACC AAGATTGACT CAGAGCAAGG GAAAGTGACT 
    GTCTCTGGGA GCGTAGATCC TTCAGTTCTC ATCAAGAAGC TCGCCAAATC 
    TGGTAAACAT GCTGAAATCT GGGGAGCTCC AAAGGGTAAC AACAATCCCA 
    ATCAGTCCCA AATGGCCAAT CAGTTTAAGG GAATGCAGAT TGACCATGGA 
    AAAGCCGGAG GCGGTGGTGG CGGAAACAAT AATAACAACA AGAAAGGCCA 
    GAAAAACGGC GGAGGAGGTG GCGGCGGTGG AGGTGGAGGT AACAGTAATG 
    CGCCAAAGAT GGGCCAGCAA CTGAATCCAC AACATTTGCA GCAGCTTCAA 
    CAGCTTCAGA AGATGAAAGG GTTTCAAGAT CTGAAGCTTC CTCCTCAGTT 
    AAAAGGCTCT GTTCCTGTCA ACAAGAACCA AAACCAGAAA GGAGTCAAGT 
    TTGATGTCCC TGAAGATGAT GATGATGATG ATTTCAGTGA CGAATTCGAT 
    GATGAATTTA CTGATGATGA TGACGACGAG TTTGATGATG AGTTTGACGA 
    TCTCCCTCTT CCGTCTAATA AGATGAAGCC CAACATGACG ATGATGCCTA 
    ATGCTCAACA GATGATGATG AACGCTCAGA AGAATGCCAA TCTTGCCGGT 
    GGTCCTGCTA AAAACGGCGG TAAAGGCGCT CCCGCTGCTG GCGGCGGCGG 
    TGCCGGTGGT GGAAAGGGTG CTGGCGGCGG TGCTAAGGGT GGTCCTGGGA 
    ATCAAAACCA AGGTGGAGGC AAGAACGGCG GTGGTGGACA TCCACAAGAT 
    GGTAAAAACG GCGGTGGAGG CGGTGGTCCC AACGCCGGAA AAAAGGGTAA 
    CGGCGGAGGT GGGCCCATGG CTGGAGGAGT TTCGGGAGGT TTCCGACCCA 
    TGGGAGGTGG AGGACCACAG AATATGAGCA TGCCAATGGG TGGTCAAATG 
    GGTATGGGTG GTCCGATGGG GAATATGCCG GCGGTTCAGG GGTTACCAGC 
    GACCGGTCCA GGCGGTGCAC CACAGGGTTA TTTCCAAGGG GCCGGGATAG 
    ATCCTATGCA AATGCAGCAA CAGCAACAAC AACAGCAATA TTTAGCGGCG 
    GTTATGAACC AGCAACGAGC TATGGGGAAC GAACGGTTCC AACCAATGAT 
    GTACGCAAGG CCACCACCGG CAGTTAACTA TATGCCGCCA AACCCGCACC 
    AATATCCGAA TCCGCATCCG TATCCGTATC CGTACCCGTA TCCATATCCT 
    CCACCTTATG GGAATGATCA ATACTCTCAT GCCTTTAGCG ACGAGAACAC 
    ATCAAGCTGC GATATTATGT GAGATGGTTA AAAATCAAAA TAAAACTTTT 
    ATAGTTTGTG TGTATTTGAA TCCTAAGTTG GGGTTTTTTT CGATGGATCG 
    AAATGCTAAG TTGTTGTAGG TTTTTTTTTT TCACTTTGTG ATAGCTTCGG 
    TAATTTAATA GAATAATATA AAATTTG

    Gene models with high sequence identity

    1. AT3G06130.1 [+] show detail - Heavy metal transport/detoxification superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther CHLOROPLAST-TARGETED COPPER CHAPERONE 3.1e-37
    HMMPanther COPPER TRANSPORT PROTEIN ATOX1-RELATED 3.1e-37
    superfamily Heavy metal transport/detoxification protein 3.8e-18
    ProfileScan Heavy metal transport/detoxification protein 11.429
    Gene3D no description 1e-12
    HMMPfam Heavy metal transport/detoxification protein 1.1e-12

    See the detailed result >

    AT3G06130.1

    Model type
    Protein coding
    Short Description
    Heavy metal transport/detoxification superfamily protein
    Computational Description
    Heavy metal transport/detoxification superfamily protein ; FUNCTIONS IN: metal ion binding; INVOLVED IN: metal ion transport; LOCATED IN: cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heavy metal transport/detoxification protein (InterPro:IPR006121); BEST Arabidopsis thaliana protein match is: Heavy metal transport/detoxification superfamily protein (TAIR:AT5G19090.1); Has 122077 Blast hits to 41053 proteins in 2213 species: Archae - 188; Bacteria - 33817; Metazoa - 49902; Fungi - 6812; Plants - 10774; Viruses - 1540; Other Eukaryotes - 19044 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR