F25425

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25425

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25425

Determination of introduced cDNA(s)

RAFL05-04-O06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-O06 - Resource: pda02451

full reading [+] show sequence

AAGATAAACC CAATTTTGTT ATTTTTGTTC TCTCTTCTCT CTCGTTCATG 
TTTCAAATCT GTTTCTAGGG TTTCACAAAC CAGAGATAGA GAGAGGTTTA 
GCGAAAAATG GCGATGGCCA TGGCTCTTCG AAGGCTTTCT TCTTCAATTG 
ACAAACCCAT TCGTCCTCTT ATTCGATCCA CTTCATGTTA CATGTCTTCT 
TTGCCCAGTG AAGCTGTTGA TGAGAAGGAA AGATCTCGTG TCACTTGGCC 
AAAACAGCTT AACGCACCTT TAGAGGAGGT TGATCCTGAG ATTGCTGACA 
TTATTGAGCA TGAGAAAGCT AGACAATGGA AGGGACTTGA ACTTATTCCA 
TCTGAGAACT TCACATCTGT GTCGGTGATG CAAGCTGTTG GGTCTGTCAT 
GACTAACAAA TACAGTGAAG GCTATCCTGG TGCCAGATAC TATGGAGGAA 
ATGAGTATAT AGACATGGCA GAAACCTTAT GCCAGAAGCG CGCTCTTGAA 
GCTTTCCGGT TAGATCCTGA AAAGTGGGGA GTGAATGTTC AACCTTTGTC 
TGGATCTCCT GCCAACTTCC ATGTGTACAC TGCATTGTTA AAGCCTCATG 
AAAGAATCAT GGCACTTGAT CTTCCTCATG GTGGTCATCT TTCTCATGGT 
TATCAGACTG ACACCAAGAA GATATCAGCT GTGTCTATCT TCTTTGAAAC 
AATGCCCTAT AGATTGGACG AGAGCACTGG CTACATCGAC TACGATCAGA 
TGGAGAAAAG TGCTACTCTT TTCAGGCCAA AATTGATTGT TGCTGGTGCA 
AGTGCTTATG CTAGATTGTA TGACTATGCC CGCATCAGAA AGGTCTGTAA 
CAAGCAAAAA GCTGTAATGC TAGCAGATAT GGCACACATC AGTGGTTTGG 
TTGCTGCTAA TGTAATCCCT TCACCGTTCG ACTATGCTGA TGTTGTAACC 
ACCACAACTC ACAAGTCACT TCGTGGACCC CGTGGAGCCA TGATTTTCTT 
CAGAAAGGGT GTTAAGGAAA TTAACAAGCA AGGGAAAGAG GTTTTGTATG 
ATTTTGAAGA CAAGATCAAC CAAGCTGTCT TCCCTGGTCT TCAAGGTGGT 
CCACACAACC ACACTATCAC AGGACTAGCT GTTGCTTTGA AACAGGCAAC 
TACTTCAGAG TACAAAGCAT ACCAAGAACA AGTCCTGAGT AACAGTGCAA 
AGTTTGCTCA GACTCTAATG GAGAGAGGAT ATGAACTTGT TTCTGGTGGA 
ACTGACAACC ATCTGGTTCT AGTGAATCTA AAGCCCAAGG GAATTGATGG 
ATCTAGAGTT GAGAAAGTGT TGGAAGCTGT TCACATTGCA TCCAACAAAA 
ACACTGTTCC TGGAGATGTT TCTGCCATGG TTCCTGGTGG AATCAGAATG 
GGTACTCCTG CTCTCACTTC CAGAGGCTTT GTTGAGGAAG ACTTTGCCAA 
AGTAGCTGAA TACTTCGACA AAGCTGTGAC AATAGCTCTC AAAGTCAAAT 
CTGAAGCTCA AGGAACCAAG TTGAAGGATT TCGTGTCAGC AATGGAATCC 
TCTTCAACCA TCCAATCCGA GATTGCGAAA CTGCGCCATG AAGTCGAGGA 
ATTCGCTAAG CAGTTCCCAA CAATTGGGTT TGAGAAAGAA ACCATGAAGT 
ACAAGAACTA AACTGTTTCA CCCCACAAGT GTTTTCTGTT ATGCTTTGAA 
TTCCCATGGA ATGTATAGAT GATACATGTA AAACTCTATT TTCACGCTAT 
GCGAAAAATA ATGATCTGTT AAATC

Gene models with high sequence identity

AT4G37930.1 [+] show detail - serine transhydroxymethyltransferase 1
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPanther	Serine hydroxymethyltransferase	0
superfamily	Pyridoxal phosphate-dependent transferase, major domain	3.2e-182
PatternScan	Serine hydroxymethyltransferase, pyridoxal phosphate binding site	0
HMMPfam	Serine hydroxymethyltransferase	6.6e-211
Gene3D	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	1.9e-101
HMMPIR	Serine hydroxymethyltransferase	5e-218

See the detailed result >

AT4G37930.1

Model type: Protein coding
Short Description: serine transhydroxymethyltransferase 1
Curator Summary: Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants.
Computational Description: serine transhydroxymethyltransferase 1 (SHM1); FUNCTIONS IN: poly(U) RNA binding, glycine hydroxymethyltransferase activity; INVOLVED IN: in 8 processes; LOCATED IN: in 9 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine hydroxymethyltransferase 2 (TAIR:AT5G26780.1); Has 11621 Blast hits to 11596 proteins in 2825 species: Archae - 258; Bacteria - 6371; Metazoa - 337; Fungi - 287; Plants - 346; Viruses - 6; Other Eukaryotes - 4016 (source: NCBI BLink).
Link: InterPro Scan - TAIR