F25444

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25444

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25444

Determination of introduced cDNA(s)

  • RAFL02-10-H11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-10-H11 - Resource: pda00131

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-10-H11 - full reading 
    ATAAACATAG ATTCCTCTAT ATTCAGCCCC GGCTATCAGA TCGTCTTCTT 
    TATCGCTCCT CTAATTATAT TCATCTCGAG AGACGAGAGC TAAAGAACTA 
    CTTCCAAAAA AATGCCGATT GCTGAGCTTG CTGTAATCAA AACAGTGGGT 
    GGGCCTCTGA TAGCGGCTGC TCTTGGAGTT GGAGCCCAAG TCATTTACGA 
    CGGCTTCAGA AAAGGAAAAG ATACATCTAT CATAAACCGT CTCGGCCGTA 
    CAATGGAAAG TATCAGTCCG GTGCGGGATC GAATCGGTAA GCTCAGTAAT 
    GTGGAAGGTA AACCATTTAG GGAAGTCCAC GAAAGTCTTA CGCGTCTCCT 
    TGAAGATGCG AAATCTATTA TTGAGAAATA TTGGAAACTC AGATGGAGCA 
    GACACGTTTG CAGGAAGTAC AGGTACATCA AAAAACTCGA ATCGATAGAA 
    CTTGAATTAG TAAGGGTAGC ACGTGAGATA CAAGTCCACC AATGGACCGA 
    TATCAAAGAA ATGAAGGCGA TACAAGTCCA CCAATGGACC GATATCAAAG 
    AAATGAAGGC GATACAAGTC GACCAATGGA CCGATATCAA AGAAATGAAG 
    GCGATACAAG TCGACCAATG GATCGATATC AAAGAAATGA AGGCGATACA 
    AGTCGACCAA TGGACCGATA TCAAAGAAAT GAAGGCCCAG ATATCTGAAA 
    AGCATAATAA ATGAATCAAT ATCTAAAATC TGGTGTTTTT CTCTCTTTCT 
    TCTTCCCAAC AATGATTGAA AAACTCTTTC TTGTTATGAA TAAAGATGGA 
    TGCCCATTAT AAGGCCCATC ATCTAAGCCC ATCATCTAGA TGTTTCTAGG 
    GTTTTACCCT TTCCTTGTAC TCCTATATAA AGAACCCTTT ATCTCAATGG 
    AATAACACAC TCATTTCTTC T

    Gene models with high sequence identity

    1. AT3G50480.1 [+] show detail - homolog of RPW8 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Powdery mildew resistance protein, RPW8 domain 3.4e-54
    ProfileScan Powdery mildew resistance protein, RPW8 domain 13.951

    See the detailed result >

    AT3G50480.1

    Model type
    Protein coding
    Short Description
    homolog of RPW8 4
    Curator Summary
    Homolog of RPW8
    Computational Description
    homolog of RPW8 4 (HR4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to other organism; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Powdery mildew resistance protein, RPW8 domain (InterPro:IPR008808); BEST Arabidopsis thaliana protein match is: homolog of RPW8 3 (TAIR:AT3G50470.1); Has 106 Blast hits to 90 proteins in 15 species: Archae - 14; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 72; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR