F25716

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F25716

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F25716

Determination of introduced cDNA(s)

  • RAFL02-08-H09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-08-H09 - Resource: pda02254

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-08-H09 - full reading
    GAGGAGAAGA TAAATCCGAT CTAGGTCTCT TCTTCCCCAA TCTCTCTGTG 
    TCTCTCTCGA TCGAAGAAAG AAGACAATGG ACAAAGGCAA AGCAGTGATG
    GGTACTGGTC GGAGATGGGC CGTCGAATTC TCCGATCAAT CTACTGTTCC
    ATCTTCCCGT GACATCCTCG ATCCACCTGG CTTCTCTCGT GCCTCTCAGG
    AACAGGATGA TTCAGCAAAC AGCCGCCAAA AGAAAGACGC TGAAGCTACT
    TGGAAACTTC AGAAAGCGTG GGAAGTAGCG CAATCTCCAT TTAAGAATTT
    GATGATGATG GGTTTCATGA TGTGGATGGC TGGAAACACA GTTCATCTTT
    TTAGTATTGG TATTACTTTC TCTGCTCTTT GGCAGCCTAT CAGTGCTCTT
    CAGAGTGTTG GAAAGATTTT TGAGCCATTC AAGGATAACA AAGTGGAACT
    ACTTATGCCG AAATTAGTGT TCCTTGCCCT AAACCTTGGA GGGCTAGCTT
    TGGGTGTCTG GAAGCTTAAC ACTTTGGGGC TTCTTCCAAC ACATGCATCA
    GATTGGGTTT CATCTCTACC CCCTCCTCAG GAAGTTGAAC ACTCGGGCGG
    AGGATTTGTT TTCCACTGAT GAATCAGCGT CTCTTGTATT TTAAAATAAT
    CCGCTAAAAC CGCGCGACAA CGACAACACT TTTGTGAGAT AACTGCAACA
    GTTACTTAAG TGATATGAAC CTCCCTCATC TTATGATATT CTTGTAGCAT
    TTTCAAAACT CAGAAACCAT AGTTTTTACA CTTTTTAGTA TGATGCTCAT
    TGTTCATCAT AACTATGAAT GTATTATTGG CACTGAAGGG ACCTTATCTC
    CC

    Gene models with high sequence identity

    1. AT5G10780.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1077 2.9e-41
    HMMPanther SUBFAMILY NOT NAMED 8e-142
    HMMPanther Protein of unknown function DUF1077 8e-142
    HMMPIR Uncharacterised conserved protein UCP017207, transmembrane protein 85 2.2e-84

    See the detailed result >

    AT5G10780.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR