F26021

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26021

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26021

Determination of introduced cDNA(s)

  • RAFL09-71-B10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-71-B10 - Resource: pda06748

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-71-B10 - full reading 
    AAGTTTTAAC GGACGCGAGA AATCACAGAG GAAGCGAAGT CAGTGTAGAG 
    ATATCTAATT GCGATGGCTT TTTTGAGTAA ATTCGGGAAC ATATTGAAGC 
    AGACCACAAA CAAGCAACTC AATGCTCAGG TTTCTTTATC AAGCCCTTCG 
    CTTTTTCAAG CAATAAGGTG TATGTCATCT TCTAAGCTCT TTATTGGAGG 
    TATGGCTTAT AGCATGGATG AGGATAGCTT AAGAGAAGCT TTCACCAAAT 
    ACGGTGAAGT TGTCGATACT AGAGTTATTT TGGATCGTGA AACTGGTAGG 
    TCAAGGGGAT TTGGATTTGT TACATTCACC TCTTCAGAAG CGGCATCTAG 
    TGCTATCCAG GCTTTGGATG GCCGGGATCT CCATGGCCGG GTTGTTAAAG 
    TAAACTATGC AAATGATAGA ACAAGTGGTG GTGGTTTTGG AGGTGGTGGC 
    TATGGAGGCG GTGGTGGTGG TTATGGTGGT AGTGGTGGCT ACGGAGGAGG 
    TGCTGGTGGC TACGGAGGAA GTGGTGGCTA TGGAGGCGGT GCTGGTGGCT 
    ACGGAGGTAA TTCTGGTGGT GGCTACGGAG GTAATGCTGC TGGTGGATAT 
    GGAGGCAGTG GTGCTGGTGG CTATGGAGGC GATGCTACTG GTCACGGAGG 
    TGCTGGTGGA GGTTATGGTT CAAGCGGTGG CTTTGGATCT AGCGGCAACA 
    CTTATGGGGA GGGTTCAAGT GCAAGCGCAG GTGCTGTTGG TGACTATAAT 
    GGAAGTAGTG GTTATGGTAG CGCCAATACT TATGGTAGCA GCAATGGTGG 
    ATTCGCTGGA GACAGCCAGT TTGGAGGAAG CCCTGTTGGC AACAGCTCTC 
    AGTTCGGTGG TGACAATACC CAGTTTACTG CTGGTGGCCA ATTTGGCGGT 
    GAGGATCAAT TTGGAAGCAT GGAGAAAAGT GAAACGAAGA TGGAAGATGG 
    ACCAATAGGT GGAGAATTCG AAGATGTTGC CAAAAGAGCT TGAAGGAACT 
    AGCAAAAAAT GTTGTCAAGA CTGTCTTTTC ATATTAAATC CTATGATTAG 
    TAGTAGCTAG CTATTCTACA TTGCTTCCTG AATTAAACAC TTTATCAAGA 
    AACAATCTGC TTTTGCTATC TTTGAAAATA ATTTGTAGCT CAATTT

    Gene models with high sequence identity

    1. AT5G61030.1 [+] show detail - glycine-rich RNA-binding protein 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan RNA recognition motif, RNP-1 22.231
    HMMPfam RNA recognition motif, RNP-1 1.8e-22
    superfamily RNA-binding domain, RBD 2.2e-32
    Gene3D Nucleotide-binding, alpha-beta plait 6.7e-31
    HMMPanther RNA recognition motif, glycine rich protein 5.2e-45
    HMMPanther RNA-BINDING PROTEIN 5.2e-45
    HMMSmart RNA recognition motif, RNP-1 4e-29
    FPrintScan EGGSHELL 1.2e-08
    FPrintScan EGGSHELL 1.2e-08
    FPrintScan EGGSHELL 1.2e-08
    FPrintScan EGGSHELL 1.2e-08

    See the detailed result >

    AT5G61030.1

    Model type
    Protein coding
    Short Description
    glycine-rich RNA-binding protein 3
    Curator Summary
    encodes a glycine-rich RNA binding protein. Gene expression is induced by cold.
    Computational Description
    glycine-rich RNA-binding protein 3 (GR-RBP3); FUNCTIONS IN: RNA binding, copper ion binding, ATP binding; INVOLVED IN: response to cold; LOCATED IN: mitochondrion; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, glycine rich protein (InterPro:IPR015465), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: glycine-rich RNA-binding protein 5 (TAIR:AT1G74230.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR