F26101

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26101

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26101

Determination of introduced cDNA(s)

  • RAFL05-07-E15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-E15 - Resource: pda01096

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-E15 - full reading 
    CTCTCTGCTC TTTGTTGATC TGTCTGTGTG GGATTCTTCC TTTAGTTCCT 
    CTGTTGATCT ATCCAATCGA ATCTTACGAA AATTTTCGAG TGAAGATGAG 
    GTCGCTTCAA GCACCGGTTG TTTGCCCTAG TGTTCGTCCC AGACAATTGG 
    GTGTCTCTGC TTTACTTGTC AACTGCTCTG TTTCGAAAAC TAGGAGTCTC 
    AGAAAACAAT TCTGGGGTAA CCAGACCAAA AATGACAAGT CTCAGGCTGC 
    TACAGTGAAT CTTCGTCTGC ATCTTCGGAG GTATAAGAGT ATCAAATGTC 
    TTTTCAGCTC GCACTCTGAT GGTACCGGAA GCACAGCAGA GAATTTCAAC 
    GAGAACGATG AGGATTATGT CAAGTCTAGT GTATTGGAAG CTGTTGAGGT 
    AAAAAGTGGA CCAGATGGTT TCATGGTGAA GATGAAGGAT GGGAGGCAAC 
    TTCGATGTGT CCACAATAAT CCTCAAGGAG GGAATCTTCC AAATTATGCT 
    CCACATTCTG CAATTGTGCT GAAAATGGAA GATGGAACTG GTCTTCTTCT 
    CCCCATTATC GTCTTGGAGA TGCCTAGTGT GTTACTTATG GCAGCAATGA 
    CAAATGTTCA AATAGCAAGG CCCACTATGT ATCAAGTGGT GAAGGACATG 
    GTAGACAAAA TGGGTTATGA GGTTAGGCTT GTTAGAGTTA CCACAAGAGT 
    TCACGAGGCA TATTTCGCAG AGTTATACCT TTCAAAGGTG GGGGATAAGT 
    CGGATTGTGT CAGCTTCGAT CTTCGTCCTT CTGATGCAAT TAATATAGCT 
    GTTAGATGCA AGGTACCTAT TCAAGTCAAC AAGTATCTAG CTTATAGTGA 
    TGGAATGAGA GTCATCGATT CCGGAAAGCT ATCAAAGCAA ACACCTGCTT 
    CTGATGGTTT ATTGTTTACT GAACTAGACC GGCCAAATGG TCAGCCTTGT 
    TTTGATACAA AAGAGTTCGA TCTAGTAAGG AACATGATGC AAGCTGTTGA 
    TGAAGAACGG TATGATGAAG CCGCTGAGTG GAGAGACAAG CTTGGCAAGT 
    TTCAGGCAAA ACGCAAATTA AGGAAATACA CATGACAGCT CGCAGACGGG 
    AGTGTTTTTA ATACATAATT TATGTAAATA ATAAAGAAGC CATTGCCATT 
    TGCCAGAAGT TGTGATCATG AAGAAAAATA TCTCTCTCGT ATGAGATATA 
    CTTTTCTCTA TCGACACTTG TGCACGTAGT TGATTCTCAA GGAACGGACA 
    AAATAAAAAT GTTATTTTAT AATTGTAGCG TGATGGTGAT GTGATGTGTA 
    CATATACATT AATCTTCTGT AATAATATAT GGTAAGCCTA CGCTTTCTCA 
    ATTACAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G19660.1 [+] show detail - Wound-responsive family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF151 4.4e-20
    HMMPfam UvrB/UvrC protein 1e-05
    superfamily Protein of unknown function DUF151 2.7e-37

    See the detailed result >

    AT1G19660.1

    Model type
    Protein coding
    Short Description
    Wound-responsive family protein
    Computational Description
    Wound-responsive family protein; FUNCTIONS IN: DNA binding, nuclease activity; INVOLVED IN: response to wounding, nucleotide-excision repair; EXPRESSED IN: ovule; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF151 (InterPro:IPR003729), UvrB/UvrC protein (InterPro:IPR001943); BEST Arabidopsis thaliana protein match is: bifunctional nuclease in basal defense response 1 (TAIR:AT1G75380.3); Has 886 Blast hits to 886 proteins in 308 species: Archae - 44; Bacteria - 551; Metazoa - 0; Fungi - 0; Plants - 105; Viruses - 0; Other Eukaryotes - 186 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR