F26228

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26228

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26228

Determination of introduced cDNA(s)

  • RAFL06-16-L14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-L14 - Resource: pda07588

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-16-L14 - full reading 
    AAGCTCTCAC CACAGTTTGA GAAGCGAAAA TGGTGTCAGG ATCAGGGATA 
    TGCTCGAAGC GCGTTGTCGT CGACGCGCGC CACCACATGC TTGGCCGTCT 
    TGCGTCGATC ACCGCTAAAG AGCTTCTCAA TGGCCAGAAA GTTGTCATTG 
    TCCGGTGCGA AGAGATTTGC CTCTCCGGCG GACTCGTTCG TCAGAAAATG 
    AAGTACATGA GGTTTCTTCG CAAACGTATG AACACTAAAC CTTCTCATGG 
    ACCTATTCAC TTCCGTGCTC CTTCCAAAAT CTTCTGGCGT ACTGTTCGCG 
    GTATGATTCC ACACAAGACG AAGCGTGGAG CTGCTGCATT AGCACGTCTG 
    AAGGTATATG AAGGTGTTCC TACTCCATAT GACAAGATCA AGAGGATGGT 
    CATCCCTGAT GCTCTCAAGG TGTTGAGGCT TCAAGCTGGT CACAAATACT 
    GTCTATTGGG CCGTCTTTCT TCTGAAGTTG GGTGGAACCA TTACGACACC 
    ATCAAGGAGC TGGAGACAAA GAGGAAGGAG AGAGCCCACG TGGTTTACGA 
    GCGAAAGAAG CAACTTAACA AACTTAGAGT TAAGGCCGAG AAGGTCGCTG 
    AAGAGAAGCT CGGAGCACAG CTCGATATTC TTGCGCCAGT TAAGTACTGA 
    GCTTGTCAGT AGTAGTTTTT TTTTTTT

    Gene models with high sequence identity

    1. AT5G48760.1 [+] show detail - Ribosomal protein L13 family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein L13, eukaryotic/archaeal 1e-135
    HMMPanther Ribosomal protein L13 1e-135
    HMMPfam Ribosomal protein L13 8.7e-28
    HMMTigr Ribosomal protein L13, eukaryotic/archaeal 3.8e-73
    Gene3D Ribosomal protein L13 5.7e-46
    PatternScan Ribosomal protein L13 0
    superfamily Ribosomal protein L13 1e-49

    See the detailed result >

    AT5G48760.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L13 family protein
    Computational Description
    Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13 (InterPro:IPR005822), Ribosomal protein L13, eukaryotic/archaeal (InterPro:IPR005755); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT4G13170.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR