F26237

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26237

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26237

Determination of introduced cDNA(s)

  • RAFL09-89-J12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-89-J12 - Resource: pda06935

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-89-J12 - full reading 
    ATGAAATTGG TTTGTTGACT GTAAATTACA TCGGAGAATT GTAGTGATCG 
    GAGAAAATGA GTGGCGTGGT TGGGTTTGTT GGTCTTGATT CTTTCAGCTT 
    CGAATTAGCT TCTTCGCTTC TTCGTTCTGG GTTTAAGGTT CAAGCATTCG 
    AGATAAGTAC AGAATTAGTG GAGAAGTTCA TTGAATTGGG AGGACACAAA 
    TGTGACAGCC CTGCAGATGT TGGGAAAGCT GCAGCAGCCG TTGTGGTTGT 
    ACTATCCCAC CCTGACCAAA TTCAAGATGT CATTTTTGGT GATGAGGGTG 
    TTATGAAAGG TCTACAGAAG GACGCTGTAT TGCTTTTGTC TTCGACAATA 
    TCGACTTTGC AACTCCAGAA ACTAGAGAAA CAACTTACAG AGAAAAGAGA 
    GCAGATTTTT GTAGTTGATG CCTATGTTTT AAAAGGGATG TCTGAGCTTC 
    TTGATGGAAA ACTAATGATA ATAGCATCTG GAAGGTCAGA TTCGATCACA 
    AGAGCACAAC CCTATCTTAC TGCAATGTGT CAAAATCTGT ACACCTTTGA 
    GGGAGAAATT GGTGCTGGAA GTAAAGTTAA AATGGTGAAT GAGTTGCTTG 
    AGGGCATACA TCTTGTTGCT GCTGTGGAGG CTATATCTTT AGGTTCTCAG 
    GCGGGTGTGC ATCCATGGAT ACTTTATGAC ATAATTTCCA ATGCTGCTGG 
    AAATTCATGG ATTTACAAGA ATCATATTCC GTTGTTGCTA AAAGATGACA 
    TAGAGGGTCG CTTCCTCGAT GTTCTCTCTC AGAATCTGGC CATTGTTGAA 
    GATAAAGCCA AATCGCTCCC ATTTCCTGTC CCACTTTTGG CAGTTGCACG 
    CCAACAACTA ATCTCTGGAA TATCACAGAT GCAGGGAGAT GATACAGCTA 
    CTTCATTGGC TAAGATCTCG GAAAAAGTAC TTGGTGTTGG CATATTAGAA 
    GCAGCCAATA GAGAACTTTA TAAGCCAGAG GATTTGGCCA AAGAAATTAC 
    TACTCAAGCA AAGCCTGTGA ATAGAATTGG TTTTATTGGT CTTGGAGCAA 
    TGGGTTTTGG CATGGCAGCA CACCTGTTGA AATCAAATTT TTCTGTCTGT 
    GGTTATGACG TATACAAGCC AACACTTGTC AGATTTGAGA ATGCCGGGGG 
    ATTGGCGGCA AATTCTCCAG CTGAAGTGAC GAAAGATGTA GATGTTCTTG 
    TAATTATGGT AACAAACGAG GTTCAGGCTG AGGATGTCTT GTATGGACAT 
    CTTGGAGCGG TTGAAGCTAT ACCATCTGGA GCAACTGTTG TACTTGCGTC 
    AACAGTATCT CCCGCGTTTG TTAGCCAACT TGAAAGGCGT CTAGAAAATG 
    AGGGAAAAGA CCTAAAGCTA GTTGATGCTC CTGTGTCTGG TGGTGTCAAG 
    AGGGCTGCCA TGGGGGAGCT TACGATAATG GCTTCAGGTA CCGATGAAGC 
    ACTTAAGTCT GCGGGACTTG TGTTATCAGC ATTAAGTGAG AAGCTCTACG 
    TGATTAAAGG AGGTTGTGGG GCAGGAAGTG GTGTAAAAAT GGTCAATCAA 
    TTGCTTGCGG GAGTTCATAT CGCATCAGCT GCCGAGGCAA TGGCATTTGG 
    AGCTCGGTTA GGTCTGAATA CTCGAAAGCT ATTCAATGTT ATTTCCAACA 
    GCGGTGGAAC ATCTTGGATG TTTGAAAATC GTGTTCCGCA CATGCTGGAT 
    AATGATTACA CACCATACTC TGCTCTTGAT ATTTTTGTCA AGGATTTGGG 
    AATTGTTACC CGAGAAGGTT CATCCCGTAA AGTTCCACTC CATATATCAA 
    CAGTGGCACA CCAGCTATTC TTAGCCGGCT CTGCTGCGGG CTGGGGACGG 
    ATAGATGATG CTGGAGTGGT GAAGGTTTAT GAAACCCTTG CTGGAATTAA 
    AGTCGAAGGG AGACTTCCTG TTCTGAAGAA ACAAGACCTA CTGAAATCTC 
    TTCCAGCTGA ATGGCCTTCA GACCCTACAA CTGACATACA TAGACTAAAT 
    ATGGGAAACT CGAAGACATT GGTTGTTCTT GATGATGATC CAACTGGCAC 
    ACAAACTGTT CATGACGTAG AGGTTTTAAC TGAATGGAGT GTTGAATCTA 
    TTTCTGAGCA GTTTAGAAAA AAGCCTGCAT GCTTCTTCAT TTTGACAAAT 
    TCAAGGTCCC TGAGCCCTGA GAAGGCTAGT GAATTGATCA AAGACATCTG 
    TTCCAACCTA TGTGCTGCAT CAAAAGAAGT TGGCAATGCT GACTACACGA 
    TTGTTCTGAG GGGTGATTCA ACATTACGTG GTCATTTTCC TCAGGAAGCA 
    GATGCTGCTG TCTCAATACT TGGGGAAATG GATGCATGGA TTATTTGCCC 
    CTTCTTCCTT CAAGGGGGAC GTTATACTAT TGATGATGTG CATTATGTTG 
    CGGATTCTGA TAGGCTCGTT CCTGCAGGAG AGACAGAGTT TGCCAAAGAT 
    GCATCCTTTG GATATAAATC CTCAAATCTC CGTGAGTGGG TTGAGGAGAA 
    AACAGCTGGC GTCATTCCGG CTAACAGCGT TCAGTCGATC TCAATTCAGC 
    TTTTAAGAAA AGGTGGCCCT GATGCAGTGT GTGAGTTTCT GTGCAGTTTA 
    AAGAAGGGGT CTACATGTAT TGTCAACGCC GCTAGTGAAA GAGACATGGC 
    TGTATTTGCA GCCGGGATGA TCCAGGCAGA ACTGAAAGGG AGATCCTTTT 
    TATGCCGCAC TGCTGCTAGC TTTGTGTCTG CTCTAATAGG GATTATTCCA 
    AAAGATCCTG TGTTGCCAAA AGATTTCGAA TCTAACAAAG AAAGCAGTGG 
    TGCACTAATA GTTGTAGGCT CATATGTCCC GAAAACAACA AAGCAGGTTG 
    AAGAACTTCA ATCACAACAT AACCAGAATT TAAGGAGCAT CGAGATCTCT 
    GTAGAAAAAG TTGCTCTCAA GTCATCTGAA GTGAGAGATG AAGAAATCAG 
    AAGAGCAGTT GAGATGGCCG ATGCTTTCCT TCGGGCTGGC AGGGAGACTC 
    TAATTATGAG CAGTCGTGAA CTCATCACGG GAAAAACATC TTCGGAAAGT 
    CTTGATATTA ACAGCAAAGT GAGCTCCGCT CTGGTTGAAG TAGTGAGCCA 
    GATATCGACC AGACCTCGTT ATATTCTTGC TAAGGGTGGA ATTACGTCAT 
    CAGACACAGC AACGAAAGCC CTGAAAGCAC GACGTGCACT TGTGATTGGT 
    CAAGCCCTTG CTGGTGTTCC AGTATGGAAG TTAGGTCCAG AAAGTAGACA 
    TCCAGGGGTC CCCTACATTG TTTTCCCTGG TAATGTTGGT AACAGCACAG 
    CGCTTGCAGA AGTTGTGAAG TCTTGGTCAG TGGTAGCAGG ACGGTCGACA 
    AAAGAGCTGC TTCTGAATGC AGAAAAAGGT GGATATGCAG TTGGAGCATT 
    TAACGTGTAT AACCTGGAAG GAATAGAAGC TGTTGTAGCG GCCGCAGAGG 
    AAGAAAATAG TCCTGCTATA TTGCAGGTCC ATCCAGGTGC CTTTAAACAA 
    GGAGGCATTC CTTTGGTTTC ATGTTGCATC TCTGCAGCTG AACAAGCCAG 
    GGTTCCAATA TCCGTACACT TTGATCATGG AACTACAAAG CATGAGCTAT 
    TAGAAGCTCT TGAGCTAGGA CTAGATTCAG TGATGGTAGA TGGTTCTCAT 
    CTTTCCTTCA CAGAAAATTT ATCCTACACG AAATCCATAA CAGAGTTGGC 
    CCGTTCCAAA AACATTATGG TGGAAGCTGA ACTAGGCCGA CTCTCAGGAA 
    CAGAGGATGG CTTGACTGTT GAAGACTATG AAGCAAAGCT CACCAACGTT 
    AACCAGGCTC AGGAATTTAT GGAAACTGGT ATAGATGCTT TGGCTGTGTG 
    TATAGGAAAT GTCCATGGAA AGTACCCCAA GTCCGGTCCA AACCTCAAGC 
    TTGATTTACT TAAGGAACTG CACGCCTTAA GCTCGAAGAA AGGCGTTTTT 
    CTTGTTCTTC ACGGAGCTTC TGGTTTGTCT GAGAACCTTA TCAAGGAATG 
    CATTGAGAAT GGAGTGAGGA AGTTCAACGT GAACACAGAA GTAAGAACGG 
    CTTACATGGA AGCTCTTAGC TCTGGGAAGA AGACCGACAT TGTTGATGTC 
    ATGTCCGCAA CAAAAGCAGC CATGAAAGCT GTGATCGCAG ATAAGATCCG 
    TCTCTTTGGC TCTGCCGGAA AAGCTTGAGT TGTTGATAAA AAAATGTCCG 
    ATCAATTAGT TAAGTACAAT TGTACATCAC ATCCAAAGAA TAAAAAAACA 
    ACAAATATTA CATCACATCC AAAGAAGATG AATGCATTGT ATGCAATGCA 
    GATGCAGTGT TGTTGGAAAT AAAGAAATCA TTTTTAGTAC TAAAAAAAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT1G18270.1 [+] show detail - ketose-bisphosphate aldolase class-II family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan 3-hydroxyisobutyrate dehydrogenase-related, conserved site 0
    HMMPfam Ketose-bisphosphate aldolase, class-II 4.7e-90
    HMMPfam 6-phosphogluconate dehydrogenase, NAD-binding 9.7e-25
    HMMPfam 6-phosphogluconate dehydrogenase, NAD-binding 9.5e-39
    HMMPfam Protein of unknown function, DUF1537 3.8e-26
    superfamily Aldolase 5.2e-89
    superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 2.2e-37
    superfamily NAD(P)-binding domain 2e-33
    superfamily 6-phosphogluconate dehydrogenase, C-terminal-like 3.8e-27
    superfamily NAD(P)-binding domain 1.7e-22
    Gene3D NAD(P)-binding domain 1.5e-26
    Gene3D Dehydrogenase, multihelical 1e-23
    Gene3D NAD(P)-binding domain 5.6e-35
    Gene3D Dehydrogenase, multihelical 3.7e-36
    Gene3D Aldolase-type TIM barrel 1.3e-84
    HMMTigr Ketose-bisphosphate aldolase, class-II 5.4e-70
    HMMPanther 3-HYDROXYISOBUTYRATE DEHYDROGENASE 2.3e-139
    HMMPanther 3-hydroxyacid dehydrogenase/reductase 2.3e-139

    See the detailed result >

    AT1G18270.1

    Model type
    Protein coding
    Short Description
    ketose-bisphosphate aldolase class-II family protein
    Computational Description
    ketose-bisphosphate aldolase class-II family protein; FUNCTIONS IN: in 8 functions; INVOLVED IN: oxidation reduction, pentose-phosphate shunt, valine metabolic process, glycolysis, metabolic process; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), 6-phosphogluconate dehydrogenase, NAD-binding (InterPro:IPR006115), 6-phosphogluconate dehydrogenase, C-terminal-like (InterPro:IPR008927), Dehydrogenase, multihelical (InterPro:IPR013328), Ketose-bisphosphate aldolase, class-II (InterPro:IPR000771), 3-hydroxyacid dehydrogenase/reductase (InterPro:IPR015815), Protein of unknown function, DUF1537 (InterPro:IPR010737), NAD(P)-binding domain (InterPro:IPR016040), 3-hydroxyisobutyrate dehydrogenase-related, conserved site (InterPro:IPR002204); BEST Arabidopsis thaliana protein match is: 6-phosphogluconate dehydrogenase family protein (TAIR:AT4G20930.1); Has 34046 Blast hits to 22505 proteins in 2700 species: Archae - 264; Bacteria - 21742; Metazoa - 568; Fungi - 820; Plants - 423; Viruses - 1; Other Eukaryotes - 10228 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR