F26405

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26405

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26405

Determination of introduced cDNA(s)

  • RAFL06-74-D12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-D12 - Resource: pda03478

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-D12 - full reading 
    TGGCAGCAAT GGAGGATCTA TGGAAGAGGG CAAAATCGTT CGCAGAAGAA 
    GCGGGTAAGA AGTCTCAGAC GATAACACAA TCATCCTCCG CGACCTTCGT 
    CAATCTCGTC ACCGAGACTG CTAAGAAATC CAAGGAACTC GCTCTCGAAG 
    CTTCGAAGAA AGCTGATCAA TTCAATGCCG CCGATTTCGT TGCTGAAACG 
    GCTAAGAAAT CCAAAGAATT CGCTGCTGAA GCTTCAAAGA AGGCGGATCA 
    GTTCAAAGTC GCCGCGCTGA AACAAGCTGA TCAGATCCAG AACATCAAAT 
    CGATCGCTGA TATAATCGGG ACCGGGACCG GGTCAGGATC CGGTTCAGAA 
    GCGGAGCTTC TCGAATTCGG TGTAACGGAT GATTTGAGAG AGTTCGCTGA 
    AGGCTTGACC TCTGCTACAT TCCAAGCTTT TCCTGATCAA GATCAAGGGG 
    ATGAAGTTTC CGATGTGATA ACAAATGCTT CGAATGTTCG AAAGGATCTC 
    TCGGATTGGC AAGAGAGACA TGCCACTCTG GTTCTAACCT CTGTCAAGCA 
    AATCTCCAAG TTAAGATACG AACTTTGCCC TCGTTTCATG AAAGAAAGGA 
    GGTTCTGGAG GATTTATTTC ACACTAGTGA GCACTCATGT TTCTCCATAT 
    GAGAGGAAGT ACATGGAGGA ACTTAAGACC AAAGGAGAGC ATGGAAATGA 
    AGAAGCTAAG AAGGCTCCAG CGACTGGAGA GACAGAAACA GTAGAAAAGA 
    ATGTTGCAAT CCGTAGAACA TCTACTGCGT CTTCTGAGCA GGATCTGGAT 
    ACATTCCTGT TGGGTGATCT AGAAGACAGT GATGAAGCTC CAGATGATGG 
    TGATGGAAGC CTTGAGGATG ACTTTGACAA GATTGGAAAC TCAGATGTTG 
    AAGACGAGAA GCAATCATCT AAAGCTACAA CAAATGCAGG AAACGAAGTG 
    TCTTGTTAGT TTTAAGTTCC AATTAGAAAA GGGTAAATGA AGAAGATGCT 
    TGAAATGTAT AGTTTTGATT TAGTAAGTGA TGCATACGAA GACCTTGATT 
    TCGCAATTCA TATATGATTC ATTTGTTTTG CC

    Gene models with high sequence identity

    1. AT1G26300.1 [+] show detail - BSD domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart BSD 3.9e-12
    HMMPfam BSD 1.4e-11
    Coil coiled-coil 0
    ProfileScan BSD 10.958

    See the detailed result >

    AT1G26300.1

    Model type
    Protein coding
    Short Description
    BSD domain-containing protein
    Computational Description
    BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT1G69030.1); Has 242 Blast hits to 239 proteins in 42 species: Archae - 4; Bacteria - 13; Metazoa - 9; Fungi - 4; Plants - 182; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR