F26422

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26422

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26422

Determination of introduced cDNA(s)

  • RAFL05-02-D04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-02-D04 - Resource: pda00844

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-02-D04 - full reading 
    GAATCAGCGG CTTCACCTCT CCAGATTTCG TGTGTGAAGA ATCATTTCAA 
    GCCATGTCTC CGGCTAAAGT TGATACTACC AAGAAGGCTG ATCCTAAGGC 
    CAAGGCCTTG AAGGCGGCAA AGGCTGTGAA GTCTGGTCAA GCCTTCAAGA 
    AGAAGGACAA AAAGATTAGG ACCAAGGTCA CCTTCCACAG GCCAAAGACT 
    CTTACCAAGC CTAGAACTGG TAAGTACCCA AAAATCAGCG CTACTCCAAG 
    GAACAAGTTG GATCACTACC AAATCCTTAA GTACCCACTC ACCACTGAAT 
    CTGCGATGAA GAAGATTGAA GACAACAACA CTCTTGTTTT CATTGTTGAC 
    ATTCGTGCTG ACAAGAAGAA GATTAAGGAT GCTGTTAAGA AGATGTATGA 
    CATCCAGACC AAGAAAGTGA ACACACTCAT CAGGCCTGAT GGAACCAAGA 
    AGGCTTACGT GAGGCTTACA CCAGACTATG ATGCTTTGGA TGTTGCTAAC 
    AAGATCGGCA TCATCTAAGT CTATCTATCT CTGCAGTTAT AAAGACTATT 
    GTGGTTTTGT CTCTTGTAGT CTCAGTTTTG CTTTTAAGAT ATTTATTATT 
    ACTATCATCT GGTAATTGTA GTATTTTGGA GCAAAAACGT TTTACAATAC 
    ATTCATGTTG CAGTTT

    Gene models with high sequence identity

    1. AT2G39460.2 [+] show detail - ribosomal protein L23AA
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L23/L25, conserved site 0
    HMMTigr Ribosomal protein L23 1.2e-35
    HMMPfam Ribosomal protein L25/L23 8.4e-19
    HMMPfam Ribosomal protein L23/L25, N-terminal 5.4e-17
    HMMPanther 60S RIBOSOMAL PROTEIN L23A 1.1e-71
    superfamily Ribosomal protein L23/L15e, core 9.4e-28
    Gene3D Nucleotide-binding, alpha-beta plait 9e-31

    See the detailed result >

    AT2G39460.2

    Model type
    Protein coding
    Short Description
    ribosomal protein L23AA
    Curator Summary
    Encodes a 60S ribosomal protein L23aA (AtrpL23aA). Paralog of RLPL23aB.
    Computational Description
    ribosomal protein L23AA (RPL23AA); FUNCTIONS IN: structural constituent of ribosome, RNA binding, nucleotide binding; INVOLVED IN: response to oxidative stress, response to high light intensity, response to cold, translation, ribosome biogenesis; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, intracellular, large ribosomal subunit; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L23/L25, conserved site (InterPro:IPR001014), Ribosomal protein L23/L15e, core (InterPro:IPR012678), Ribosomal protein L23/L25, N-terminal (InterPro:IPR005633), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Ribosomal protein L25/L23 (InterPro:IPR013025), Ribosomal protein L23 (InterPro:IPR019985); BEST Arabidopsis thaliana protein match is: ribosomal protein L23AB (TAIR:AT3G55280.2); Has 2634 Blast hits to 2634 proteins in 929 species: Archae - 307; Bacteria - 1168; Metazoa - 411; Fungi - 142; Plants - 120; Viruses - 0; Other Eukaryotes - 486 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR