F26449

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26449

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Seed::light green

Original: F26449

Determination of introduced cDNA(s)

RAFL06-15-A20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-A20 - Resource: pda07569

full reading [+] show sequence

AACACAAATA TAAGACTTTT CACTTGAAAA CCTATCCTGT TCTAAGTCTG 
AAGAGAGAAA TATACAAATG GAAGCACACA ACGTAGAGAT ATCAACAAGA 
CTTACCCCAG AAATGAAAAA CCAGGGAACC ATAGAGTTAC TCTACAAAGC 
GTTGCAGCAA GGCGACACTT CTACGGTGAC CAAAGTGGTG GCCAGTGACG 
TGGAATGGTG GTTCCATGGA CCGCACGATT GTCAACACAT GATGAGGCTG 
CTAACAGGGG AACCTCCGAG GCAGGTTTCG TTCAGGTTTG AGCCAAGCAG 
TGTACAAGTA GTGGTGCCTG GTCATGACTG CGTGATTGCA GAAGGGTGGG 
AGGGTTCACG CGTGTACTGG GTTCACGTGT GGAAATTGAA AGACGGAGTG 
GTCACTGAGC TAAGAGAGTA TTTCAACACA TGGCTCACTG TTACAGACTA 
CAGTCTTGGA GCAGTAGGAT GGGACATGGG GCGTTGTACG GTTTGGGAGA 
GCGTACCAAG GGACCTGGCT CGTGGTTCGT TGCCTAGCTT GTTGTTAGCT 
ATTTAACTAA TGACTAAAGA GTAAATTAAT TAAGTAACAC ACAGTTTGTC 
TCTGGGGGTT TCTATACTTT TATGATGAAT TTAGCCTATA TGTTCTAAAC 
AGTGTTATGT GAACCCCAAG TTGTGTATAT TATTGGTTCT TATAAAAATT 
GTCTACTCAT TTTCAGGTTC

Gene models with high sequence identity

AT5G01740.1 [+] show detail - Nuclear transport factor 2 (NTF2) family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
superfamily	NTF2-like	5.6e-11
Gene3D	no description	8.9e-08
HMMPfam	Wound-induced protein, Wun1	2e-38

See the detailed result >

AT5G01740.1

Model type: Protein coding
Short Description: Nuclear transport factor 2 (NTF2) family protein
Computational Description: Nuclear transport factor 2 (NTF2) family protein; CONTAINS InterPro DOMAIN/s: Wound-induced protein, Wun1 (InterPro:IPR009798); BEST Arabidopsis thaliana protein match is: senescence associated gene 20 (TAIR:AT3G10985.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR