F26607

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26607

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26607

Determination of introduced cDNA(s)

  • RAFL06-16-O07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-16-O07 - Resource: pdz87622

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-16-O07 - 5 prime EST 
    GATTTCCTCA CTCAACTCTC TCATTCTCAC TAACAGAGAG AAAAAGCAAA 
    AGCAAAAATG GCTCGATCTT TCGCTATTGC TGNGATCTGT ATCGTCCTCA 
    TCGCCGGCGT TACTGGTCAA GCTCCGACTT CACCACCAAC CGCTACACCA 
    GCTCCACCAA CTCCAACAAC TCCTCCACCA GCAGCAACTC CTCCTCCTGT 
    CTCAGCACCA CCACCAGTCA CAACATCTCC TCCTCCAGTC ACCACTGCTC 
    CTCCTCCAGC AAATCCACCA CCACCAGTCT CTTCTCCTCC TCCTGCTTCT 
    CCTCCACCAG CTACTCCTCC TCCAGTCGCT TCTCCTCCTC CTCCCGTTGC 
    TTCTCCTCCA CCAGCAACTC CTCCTCCCGT CGCTACTCCT CCCCCAGCTC 
    CTCTAGCTTC CCCTCCTGCT CAAGTTCCAG CTCCAGCACC GACCACGAAG 
    CCAGATTCTC CATCTCCATC TTCGTCATCT AGCCCACCTC TTCCATCAAG 
    CGACGCTCCT GGACCTAGCA CCGATTCTAT CTCTCCTGGT CCTAGCCCCA 
    CTGATGTGAA CGACCAGAAT GGAGCTAGCA AGANGGNTTC GAGCTTA

    Gene models with high sequence identity

    1. AT2G14890.1 [+] show detail - arabinogalactan protein 9
      E-value: 0; Score: 99.16

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL06-16-O07 - 3 prime EST 
    CGAGAAAAGG AATGTAGTAC ACTAATAATC AAATGGAATG AGAAATGAAG 
    CCACAAAAGT ATCTGCAATC AAAATATCCT GCTATCTCCA TCTCAAGCTC 
    TCAATAGTAT CCTCTCCGAA AGATAATAAA TCCCAAAAGA ATTCAGTCCC 
    AAGCAATACA GTGGAACAAA CAAAGACGAC ATAAAAATAA ATGCAAGTAA 
    CACAGTCACA AAAGATTCCA CTTAGATCAT AAACCAGACG AGAACAGATC 
    CAAATACTAA GCTCGAAACC ATCTTGCTAG CTCCATTCTG GTCGTTCACA 
    TCAGTGGGGC TAGGAGCAGG AGAGATAGAA TCGGTGCTAG GTCCAGGAGC 
    GTCGCTTGAT GGAAGAGGTG GGCTAGATGA CGGAGATGGA GATGGAGAAT 
    CTGGCTTCGT GGTCGGTGCT GGAGCTGGAA CTTGAGCAGG AGGGGAAGCT 
    AGAGGAGCTG GGGGAGGAGT AGCGACGGGA GGAGGAGTTG CTGGTGGAGG 
    AGAA

    Gene models with high sequence identity

    1. AT2G14890.1 [+] show detail - arabinogalactan protein 9
      E-value: 0; Score: 100.00

    AT2G14890.1

    Model type
    Protein coding
    Short Description
    arabinogalactan protein 9
    Curator Summary
    putative proline-rich protein (At2g14890) mRNA, complete
    Computational Description
    arabinogalactan protein 9 (AGP9); Has 285298 Blast hits to 106417 proteins in 3252 species: Archae - 851; Bacteria - 74147; Metazoa - 98199; Fungi - 38441; Plants - 27968; Viruses - 7387; Other Eukaryotes - 38305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR