F26918

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26918

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
fruit (PO:0009001)
  • abnormal (PATO:0000460)
    (Silique::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26918

Determination of introduced cDNA(s)

  • RAFL09-27-A12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-27-A12 - Resource: pda08104

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-27-A12 - full reading
    TGATCCAAAG AGAAAACGTA TGAGTTGCTT AAACCATAAA CCTCAAGCTC 
    AAAATTTTAT CAACCTTATA AAGTTTCGTT TTCTCGAGAT TTTGAATCTT
    TTCAGCTAAA AAAGATCACA GCTTTTTGCG TTTTCTGGAT GAGTTTGAGA
    TAAGAGAAGA TGAAGATTCA GTGTAACGTT TGTGAGGCGG CGGAAGCGAC
    GGTTCTATGT TGCGCCGACG AGGCTGCTCT TTGTTGGGCT TGCGATGAGA
    AAATTCACGC CGCTAATAAA CTCGCCGGAA AACATCAGAG AGTCCCTCTC
    TCTGCCTCTG CCTCTTCCAT ACCCAAATGT GACATTTGTC AGGAAGCATC
    TGGATTCTTC TTTTGTCTGC AAGATAGAGC TTTGCTATGT AGGAAATGTG
    ATGTTGCAAT CCACACTGTG AATCCTCATG TTTCAGCTCA CCAGAGATTT
    CTTCTCACTG GAATCAAAGT TGGTCTTGAA TCTATAGACA CTGGTCCTTC
    TACTAAATCC TCACCTACCA ATGATGATAA AACCATGGAG ACCAAACCTT
    TTGTTCAATC TATACCTGAG CCTCAAAAGA TGGCCTTCGA TCATCATCAT
    CACCAGCAGC AGCAGGAACA GCAGGAAGGA GTTATACCGG GAACTAAAGT
    CAATGATCAG ACATCGACAA AGCTTCCTCT CGTAAGTAGC GGATCAACTA
    CTGGAAGCAT TCCTCAGTGG CAAATAGAGG AGATTTTCGG GCTAACCGAC
    TTTGATCAGA GCTATGAATA CATGGAGAAT AATGGATCAT CTAAGGCGGA
    TACTAGTAGA CGAGGAGATT CAGACAGTTC TTCGATGATG AGATCTGCAG
    AAGAAGATGG AGAAGATAAC AATAACTGCT TGGGAGGTGA GACATCATGG
    GCGGTTCCAC AGATTCAGTC TCCACCTACA GCGTCTGGTC TAAACTGGCC
    TAAGCATTTT CACCACCACT CTGTGTTTGT TCCGGACATA ACTTCTTCAA
    CTCCTTATAC CGGTTCATCC CCGAATCAAA GGGTTGGGAA ACGGCGGCGA
    CGGTTCTAGC ATTTGTAATT ATCTTTTAGC CGCTTGAGAA AAGAGATTGG
    CAGCTTTCTC AGTAGATGTA AGATCACATA AATGATTTGG AAACTTGTAA
    TGTAGTGATC TGTGAGAGTC GGTGTTCTTT GTTAGCTGAA AAAACAAAAA
    GATGTTTATT TGGTTGAAGA TTATAAGGGG TTAAATTACT AAGTTATCAA
    TTTGG

    Gene models with high sequence identity

    1. AT1G78600.1 [+] show detail - light-regulated zinc finger protein 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, B-box 6.6e-13
    HMMSmart Zinc finger, B-box 3.8e-13
    HMMPfam Zinc finger, B-box 5.5e-05
    HMMPfam Zinc finger, B-box 8.2e-06
    ProfileScan Zinc finger, B-box 10.537
    ProfileScan Zinc finger, B-box 8.759

    See the detailed result >

    AT1G78600.1

    Model type
    Protein coding
    Short Description
    light-regulated zinc finger protein 1
    Computational Description
    light-regulated zinc finger protein 1 (LZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT1G06040.1); Has 1826 Blast hits to 1364 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1701; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR