F26925

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26925

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F26925

Determination of introduced cDNA(s)

  • RAFL09-34-K22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-34-K22 - Resource: pda06071

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-34-K22 - full reading 
    AAAACCCATT AACCATTACT GATAACCCAA CGAGATTACC TGTGAAAGTC 
    TTCGTCTTCC CATCATTTTC CCTCTAATAT CCTCACTTTC TGAAGATGAG 
    TTTGCTTTAA AACCACTTTG ATAAGAACAA GAAAGAAGAA GACTTTATCA 
    ACCAAAATGG GTGAAGAAGC TTGTGAGGAA TCATCAAAAG CAAGCATAGA 
    GAAAGCAATC GAAGCAATAT CTTCATTGAT TTCACTCTCT CACTCAATCA 
    AATCCTTCAA CATCAAATGG CAACTCATAA GAACCAAACT CCAAGAGCTT 
    TACTCTGGTC TCGATTCTCT CCGAAATCTC AATTCTGGAT TCGACCCATC 
    TCTCTCAAGC TTAATCTCCG CCATTCTAAT CTCTCTCAAA GACACTTACG 
    ATCTCGCTAC TCGCTGCGTT AACGTCTCCT TCAGTGGTAA GCTTCTGATG 
    CAAAGCGATT TAGATGTTAT GGCGGGGAAA TTCGATGGAC ATACGAGGAA 
    TCTATCTCGG ATTTACTCAG CTGGGATTCT AAGTCATGGA TTTGCGATCG 
    TTGTGTTGAA GCCTAATGGT AATGCTTGTA AAGATGACAT GAGGTTTTAC 
    ATTAGGGATT TGTTAACGAG AATGAAGATT GGAGATCTGG AGATGAAGAA 
    ACAAGCTTTG GTTAAGCTGA ATGAAGCTAT GGAGGAAGAT GATAGATATG 
    TTAAGATTCT GATTGAGATT AGTGATATGG TTAATGTTCT TGTTGGGTTT 
    CTTGATTCTG AGATTGGGAT TCAAGAAGAA TCTGCCAAAG CTGTGTTTTT 
    TATATCTGGG TTTGGTTCTT ATAGGGATGT TTTGATCAGA TCAGGTGTGA 
    TTGGTCCTTT GGTTAGGGTT CTTGAGAATG GGAATGGTGT TGGTAGAGAA 
    GCGTCTGCAA GGTGTTTGAT GAAATTAACT GAGAATTCTG AGAATGCTTG 
    GTCTGTTTCT GCTCATGGAG GTGTTTCAGC TTTGTTGAAG ATTTGTTCTT 
    GTAGTGATTT TGGTGGTGAA TTGATTGGTA CTTCGTGTGG TGTGTTGAGA 
    AATCTCGTTG GTGTTGAAGA GATCAAGAGG TTTATGATTG AAGAAGATCA 
    TACTGTTGCT ACTTTCATCA AGCTTATTGG ATCAAAGGAG GAGATTGTTC 
    AGGTAAATTC TATTGATTTA CTGTTGAGTA TGTGTTGTAA AGACGAACAA 
    ACCCGGGACA TCTTGGTTAG AGAAGGAGGA ATTCAGGAGC TAGTGAGTGT 
    GTTATCAGAT CCCAATTCGT TGTCTTCTTC GAAATCTAAG GAGATAGCAT 
    TAAGGGCGAT TGATAACTTA TGTTTCGGGT CTGCGGGTTG TTTGAATGCA 
    TTGATGGGTT GCAAATTCTT GGATCATTTG CTGAATCTGC TAAGAAATGG 
    GGAGATTTCT GTTCAAGAAT CAGCCTTGAA GGTCACATCT AGGCTATGTA 
    GTTTACAAGA AGAGGTTAAG AGGATAATGG GAGAGGCGGG TTTTATGCCC 
    GAGCTAGTTA AATTTCTCGA CGCCAAATCG ATAGATGTAC GACAAATGGC 
    GAGCGTGGCA CTGTACTGTT TGATCTCGGT TCCAAGGAAC AGGAAGAAGT 
    TTGCACAAGA CGACTTTAAC ATTAGCTACA TTCTCCAGTT GCTAGACCAT 
    GAAGATGGGA GCAATGTGAG CAGCGATTCA GGTAACACAA AGTTTTTGAT 
    ATCGATATTG ATGTCTTTAA CGAGCTGCAA TAGCGCGAGA AGAAAGATTG 
    CGAGTTCAGG GTATTTGAAA AGCATAGAGA AGCTAGCAGA AACTGAAGGT 
    TCAGATGCTA AGAAACTTGT GAAGAAGCTA TCAATGAACA GATTCCGCAG 
    CATACTCAGT GGTATTTGGC ATTCCTAATT TTATTTTGTT TCCTTATAGT 
    TTTTTTTTTT GTGAATTTTT CTTGAGTGTA TATTTTTACA AAGGTGTTTT 
    TGC

    Gene models with high sequence identity

    1. AT1G61350.1 [+] show detail - ARM repeat superfamily protein
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Armadillo 310
    HMMSmart Armadillo 0.029
    HMMSmart Armadillo 260
    HMMSmart Armadillo 0.87
    Gene3D Armadillo-like helical 1.1e-40
    superfamily Armadillo-type fold 5.3e-57
    Coil coiled-coil 0
    ProfileScan Armadillo 8.767

    See the detailed result >

    AT1G61350.1

    Model type
    Protein coding
    Short Description
    ARM repeat superfamily protein
    Computational Description
    ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT2G45720.2); Has 1255 Blast hits to 1059 proteins in 157 species: Archae - 0; Bacteria - 2; Metazoa - 269; Fungi - 116; Plants - 761; Viruses - 0; Other Eukaryotes - 107 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR