F26938

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F26938

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F26938

Determination of introduced cDNA(s)

  • RAFL09-70-P19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-70-P19 - Resource: pda06745

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-70-P19 - full reading 
    ATGAACAAGA CACACAGTGC AAAATGACAA AGAGCCCTTC ATCGATTTCG 
    AATCTTCTCT CTGAGTAAAT CAATTTCACA AATTCGAGGT TTTTGGTTTT 
    TAGCTTACTA CACTACTCCA AGAAGAAAAT CTCAAGTTAA AGTCATTTCC 
    TATCAAATCT CTTTTCATGG CGGCTGCTAT TCTCGTTTCT CCTGTTCGCT 
    AAATTGCGTC ATTTTCATTG AAGCTTATTA TAAAAGCGGC GTAGATCTGT 
    GATTCTACTC ATTGCATTTC CGCGTTTGTG AGGAGAAAGA GGAGAAGATG 
    TTGTGTGCTT GTTCAGGCGA ACAATTCCGG TTCGAGGATC AGCCCGGTTC 
    GCCGGAATCC CTAGCTACAA GAGATTTCTC AGCTAGTGGA CTTTCTTCTC 
    GAAACGGAGG AGGCGATTGG GATTCCAAAT TGGAAGATAT TCAAGTCGAT 
    GAAGCTGAAT CGACTTTAAA GGAAGCTCTC TCACTCAACT ATGAGGAAGC 
    TAGGGCTTTG TTGGGGAGAC TTGAATATCA GAGAGGTAAT TTTGATGCAG 
    CACTTCAAGT GTTTAAAGGG ATTGACATTA AGGTCTTAAC TCCAAGGATA 
    ATCAAAGCCA TTGTTGAGAA AACTCTTCCT TGCAAACCAC GCTCTAAAGC 
    TGTTATTGTG CCTCCCACCA CAATGTCAAT GCATTCAGTC AGTTTACTTC 
    TTGAAGCAAT CTTACTTAAA GCTAGATCAC TTGAAGAACT TGGCTCTTAC 
    AAAGAGGCTG CAGAAGAATG CAAAATAATC CTGGACGTGG TTGAAAATGC 
    ACTGCCAAGC GGCATGCCTG ACGGAATCAG CGGATTCGCT AAACTGCAGG 
    ATATCTTTCA GAAGGCCCTG GAATTGCTTC CTTTACTATG GAAAAAAGCG 
    GGGAATCATC ATGAAACTAT TGCTTCATAT CGCCGTGCTT TATCCAGACC 
    ATGGAATTTG GATCCCCAGA GGTTAGCTGT TACGCAGAAA TCCTTAGCTT 
    TGGTTTTACT TTACGGGAGT GTTGAGGCAT GTCCAAAAGA CAACATCGAG 
    GAAGCAATTG TGTTGCTAAT GTTACTTGTA AAGAAGATGG TGGTTGGGGA 
    CATACAGTGG GATCCAGAAC TCATGGATCA TCTCACTTAC GCCCTTTCCA 
    TGACTGGACA GTTTGAAGTG TTAGCGAACT ATCTAGAGCA GACTCTTCCG 
    GGTGTTTACA CCCGCGGGGA GAGATGGTAC CTTCTCTCCC TTTGTTACAG 
    TGCTGCTGGG ATCGATAAAG CGGCCATTAA TCTATTAAAG ATGGCCCTAG 
    GCCCATCTGA ATCAAGACAA ATACCACACA TTCCGTTGTT ATTGTTTGGA 
    GCAAAGCTGT GCTCTAAAGA TCCAAAACAC TCAAGGGACG GCATAAATTT 
    TGCTCATAGG CTGCTCGACT TGGGAAACAG TCAGAGTGAA CATCTTTTGA 
    GCCAAGCACA CAAGTTCCTT GGTGTATGCT ATGGAAACGC TGCAAGAAGT 
    TCTAAATTAG ACTCTGAACG GGTTTTTCTT CAGAAAAAAT CTCTGTTCTC 
    TTTAAATGAA GCAGCAAAGA GGGGTAAGGC TGATCCGGAA CTAGACGTTA 
    TATTTAACCT AAGCGTTGAG AATGCAGTTC AAAGAAATGT TCAGGCGGCT 
    TTGGATGGTG CGGTTGAGTA TTCTAGTATG GTGGGAGGAG TTTCAACTAA 
    AGGATGGAAA CATTTAGCTA TTGTCCTTTC AGCGGAGAAA CGGCTCAAGG 
    ATGCTGAATC AATACTGGAC TTCACCATGG AAGAGGCTGG TGACATTGAA 
    AAGATAGAGC TTCTGAGGTT AAAAGCTGTG CTTCAGATGG CTCAAGAACA 
    ACCTAAAAAG GCAATGAAGA CATGCAGCAG CTTACTGGGA CTAATTCGAG 
    CGCAAGAGAA ATCTGAACAA TCCGAGAGTC TGCTACAGAA ATTTGAAACG 
    GAAGCTTGGC AAGACCTGGC CTCTGTCTAT GGAAAGCTAG GTTCATGGTC 
    AGATGCAGAA ACATGTCTCG AGAAGGCAAG ATCCATGTGC TATTATTCTC 
    CCAGAGGCTG GAATGAAACA GGTTTGTGTC TAGAAGCTAA ATCACTTCAT 
    GAAGAGGCTT TAATATCCTT CTTCCTTTCG CTCTCGATCG AACCAGATCA 
    CGTACCTAGC ATTGTTTCTA TAGCAGAGGT CATGATGAAA TCTGGAGATG 
    AATCACTTCC AACCGCTAAA AGTTTTCTGA TGAATGCCTT AAGGTTAGAC 
    CCGAGAAATC ATGATGCATG GATGAAGCTA GGGCACGTTG CAAAGAAGCA 
    AGGCTTGTCA CAGCAAGCTG CAGAGTTTTA CCAAGCTGCA TATGAACTAG 
    AACTATCCGC TCCGGTACAG AGTTTCATTT GACGAATAAT ATGAGTTGAA 
    TAGTGCACAA TTCTTTTTCT TTTAAGCCTT TTTTTCTTTA ATATATGATT 
    TCGGTACTAC TAAACTTGCT TAAGATAATA ACACTCGAGT ATTATATATT 
    CCACATTACC ATTTTTTAT

    Gene models with high sequence identity

    1. AT1G27460.1 [+] show detail - no pollen germination related 1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 3.3e-15
    ProfileScan Tetratricopeptide repeat-containing 19.636
    Coil coiled-coil 0
    Coil coiled-coil 0
    Coil coiled-coil 0
    Gene3D Tetratricopeptide-like helical 4.8e-22
    superfamily TPR-like 1.2e-33
    superfamily Protein prenylyltransferase 1.6e-05
    HMMSmart Tetratricopeptide repeat 96
    HMMSmart Tetratricopeptide repeat 390
    HMMSmart Tetratricopeptide repeat 110
    HMMSmart Tetratricopeptide repeat 7
    HMMSmart Tetratricopeptide repeat 3.9
    HMMSmart Tetratricopeptide repeat 4.7

    See the detailed result >

    AT1G27460.1

    Model type
    Protein coding
    Short Description
    no pollen germination related 1
    Curator Summary
    encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits.
    Computational Description
    no pollen germination related 1 (NPGR1); FUNCTIONS IN: calmodulin binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT2G43040.1); Has 2043 Blast hits to 1708 proteins in 322 species: Archae - 185; Bacteria - 626; Metazoa - 573; Fungi - 23; Plants - 162; Viruses - 0; Other Eukaryotes - 474 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR