F27013

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27013

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27013

Determination of introduced cDNA(s)

  • RAFL05-11-I16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-11-I16 - Resource: pda09305

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-11-I16 - full reading 
    AACAAAAATC AAACTCTTTA AAAAAACAAA CAAATTGAAG AGCGATTATA 
    CGATCACGGA GAACTCAAGA TCCGGTGACG AATCCAACTT CTTGTGACGG 
    AGCTCAAGTC GAGAGAGAGA AGACTGTACT AGTAGTAGTA GCTGTGGATT 
    TTTGTGTCAT CATCGGAGAT CGGAATCTTC TTCTTCTTCT TCTTCTTGGA 
    GCTTCTAGAA GTGGAGAGAA GGGGGAAGAT CAAGCGACGG ATAGTGATAG 
    GTTTTGCTGT ATGTCAGTGG ATTGTGTTGA AACTGATTTT GGTGGATTTG 
    GAGAACTTGT GAACCCTATT CAATGGCCTC AGCTTCGAAA AAGACGTCGG 
    CATGTCCTCA CCACGGTGGC TCTCTTCCGC CTCCCAAACT CGTCTCCGCT 
    GCTCCCGATA CCGTTGCTGT ATGGTCCGAC GCTGACGATC AGCGAGCCTC 
    TAAAGTTTCT TTGGAATCCG TTATCCGCCC TGTCGATTCG TTTCCTGATA 
    ATACTGCCAA GAAACCTGCC AACAAAGGGA TTTCTGTGAT GCCAAGGACT 
    GAAACCAAGC ACCCATTGGA TCCTCTTTCT GCTGCAGAAA TATCAGTTGC 
    TGTGGCGACT GTTCGCGCAG CTGGTGCCAA TCCTGAGGTT AGGGATGGCA 
    TGCGTTTCAT TGAGGTGGCA TCAGTGGAAC CAGATAAACA AGTTGTGGCG 
    CTCGCTGATG CTTACTTTTT CCCACCGTTC CAGCCATCAC TACTTCCAAG 
    AACTAAATCT GGACCTGTGA TTCCGATGAA GCTCCCTCCA AGGCGAGCTA 
    GACTTGTTGT TTACAACCAA AAGTCTAATG AGACAAGTGT ATGGATTGTG 
    GCATTGTCTG AAGTTCATGC TGTCACTCGG GGTGGACATC ACAGGGGAAG 
    AGTTGTTTCC TCACAAGTTA TACCTGATGT TCAGCCACCC ATGGATGCGG 
    CTGAATATGC TGAATGTGAA GCGATTGTCA AAGACTTCCC ACCATTCATA 
    GAGGCAATGA AGAGGAGAGG TATTGAAGAC ATGGATCTAG TGATGGTTGA 
    TCCCTGGTGT GTGGGTTATC ACAGTGAGGC TGACGCTCCT AGTCGTAGGC 
    TTGCAAAGCC CCTTATATAC TGTCGGACTG ATAGTGATTC CCCTATGGAA 
    AATGGATATG CTCGTCCAGT TGAGGGCATT TATGTACTTG TAGACATGCA 
    AAACATGGTG GTGATTGAAT TTGAAGACCG TAAGTTTGTG CCACTCCCCC 
    CACCTGACCC TTTGAGGAAT TATACCCCAG GTGAAAGTAG AGGGGGTGTT 
    GATAGAAGTG ATGTTAAGCC TCTCCAGATT ATTCAGCCTG AAGGTCCAAG 
    TTTTCGTGTA AGGGGTTACT TTGTCGAGTG GCAGAAGTGG AACTTTCGTA 
    TTGGATTCAC TCCAAGGGAA GGTTTAGTCA TACATTCGGT AGCATATGTT 
    GATGGCAGTC GAGGTCGAAG GCCTGTTGCA CACAGGCTAA GTTTTGTGGA 
    AATGGTTGTG CCTTATGGCG ATCCTAATGA GCCACATTAC AGGAAAAATG 
    CTTTTGATGC AGGGGAGGAT GGTCTCGGGA AAAACGCACA TTCGCTTAAG 
    AAGGGGTGTG ACTGTCTGGG ATCTATCAAG TACTTCGATG CCCATTTCAC 
    AAATTTCACT GGAGGAGTTG AAACAATTGA GAACTGTGTT TGCTTGCATG 
    AAGAAGATCA TGGGATTTTG TGGAAACATC AGGACTGGAG AACAGGATTA 
    GCCGAAGTGC GAAGATCTAG GAGACTAACT GTCTCTTTTC TATGTACTGT 
    TGCCAACTAC GAGTATGGGT TTTACTGGCA CTTCTACCAG GATGGGAAAA 
    TCGAAGCTGA AGTAAAACTT ACTGGTATCC TCAGTTTAGG AGCTCTGCAG 
    CCAGGTGAAA CTCGAAAGTA CGGTACTACT ATTGCTCCTG GGTTGTATGC 
    ACCAGTCCAT CAACATTTCT TTATCGCTCG CATGGATATG TCTGTTGACT 
    GTAAACCTGC AGAAGCTTTT AATCAGGTAG TTGAGGTAAA TGTTAGAGTT 
    GACGAGCGAG GTGAGAACAA TGTCCACAAC AATGCGTTTT ATGCGGAAGA 
    GAAGTTACTT AAATCTGAGG CAGTGGCGAT GCGTGACTGT GACCCTCTTT 
    CTGCTCGCCA TTGGATTGTA AGGAACACAA GGACTGTAAA CAGGACGGGC 
    CAATTAACGG GATACAAACT TGTTCCGGGT TCAAATTGTT TGCCATTAGC 
    TCGACCCGAG GCGAAGTTTC TAAGAAGAGC CGCTTTCCTG AAGCATAATC 
    TCTGGGTTAC CCGTTACGCC CCAGACGAGA AGTTTCCTGG AGGAGAATTC 
    CCAAACCAAA ACCCACGGGC TGGTGAAGGT CTTGCCACAT GGGTGAAACA 
    GAATCGCTCC TTGGAAGAAT CTGACGTCGT TCTTTGGTAC GTGTTTGGGA 
    TCACACATGT TCCTAGACTT GAAGATTGGC CGGTTATGCC CGTCGAACAT 
    ATTGGTTTCA CACTAATGCC ACATGGATTT TTCAACTGCT CACCGGCAGT 
    AGATGTGCCA CCGAATCCAT GCGAATTGGA GACTAAGGAG AGTGAAGTCA 
    AAGAGGTTGT AGCACCGAAA GCTCTTCAGA CTGGTTTACT TTCAAAGCTT 
    TGAAGAATAT GAATATCATT TGTTTTCTTT CTTTGATCTC TTAAAAAATT 
    GGAGGCGTTG CTGTTGGTTA AGAACAATTT CATATTTGAA TCTTTTATTT 
    TCGTGTTTGG TGTGTGTGTT TGCAAGACTA AAAAGACCTT TGTCATTGGA 
    ATATTTCTAT TAAAATTTCA TATTTGAAT

    Gene models with high sequence identity

    1. AT2G42490.1 [+] show detail - Copper amine oxidase family protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Copper amine oxidase, C-terminal 1.2e-162
    HMMPfam Copper amine oxidase, N3-terminal 7.5e-35
    superfamily Copper amine oxidase, C-terminal 3.2e-151
    superfamily Copper amine oxidase, N-terminal 5.3e-34
    superfamily Copper amine oxidase, N-terminal 9.5e-16
    HMMPanther COPPER AMINE OXIDASE 2.7e-300
    HMMPanther Copper amine oxidase 2.7e-300
    Gene3D Copper amine oxidase, N2/N3-terminal 4.9e-07
    Gene3D Copper amine oxidase, N2/N3-terminal 8.2e-29
    Gene3D Copper amine oxidase, C-terminal 5.3e-152

    See the detailed result >

    AT2G42490.1

    Model type
    Protein coding
    Short Description
    Copper amine oxidase family protein
    Computational Description
    Copper amine oxidase family protein; FUNCTIONS IN: quinone binding, primary amine oxidase activity, copper ion binding; INVOLVED IN: oxidation reduction, amine metabolic process; LOCATED IN: peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Copper amine oxidase, N-terminal (InterPro:IPR016182), Copper amine oxidase, N2/N3-terminal (InterPro:IPR015801), Copper amine oxidase, N3-terminal (InterPro:IPR015802), Copper amine oxidase (InterPro:IPR000269), Copper amine oxidase, C-terminal (InterPro:IPR015798); BEST Arabidopsis thaliana protein match is: Copper amine oxidase family protein (TAIR:AT3G43670.1); Has 1554 Blast hits to 1550 proteins in 277 species: Archae - 14; Bacteria - 379; Metazoa - 243; Fungi - 461; Plants - 232; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR