F27432

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27432

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F27432

Determination of introduced cDNA(s)

  • RAFL09-40-L03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-40-L03 - Resource: pda08320

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-40-L03 - full reading 
    ACTGAGCACT TTTCAAGTAG AAGAGACACA AACATCGTTA CCTTCGCCGC 
    CATGGCCTCC GCACTCGAAT GCTGGACAAC ACGTAATGCC GCCGGTGGTT 
    GCGCCGACGA CGATTTTGTT GACCAAGTCC TAATGTCCTC CGAAGACAGG 
    TCTGAGTCCC TCACTGCTCC TCCACCTTCC GATCAAACCT CTTCCGCTAT 
    GCAAAAGCGG TTTCAGCGTC TCGGCCGCAA CGTCTCCGAC GCGATCGCGT 
    CGCTCAAGAA CTCTCTCAAC CTCGATTCGA GTCGAGACAA CCAAAATGCA 
    GCTACCGGAG GAGGTAGAAA GCTCGTATGG GCTACTGTAG TGAGAAACCT 
    TGCTAAAATG TATCCTGGAA GCCAGTTGCC TGATAAACTC GTCTCCAATC 
    TCCGAAAGCA TTACGATTCT TTGCCTCTCA GTTATAGTCA GACTGGTTTC 
    GATATGAAAG ATGTATTTGT ACACATAAAG TTGATAGAGC AAGCTTTTGG 
    AGATGATAAT CCTGTGTTTG TGATTCAAGA GGTGTGTGAT GAGGAAGCTG 
    ATGATCAGGG TTCTGTGTTT AAGCTCACAT TTGCTTGTAC TTGTTCCCTT 
    CCATGGTCAA CCATTTCAGG GTCTCTTGAT GGTGCTTTGA TTTGTTGTAA 
    GAAAGTACAA ATCTTTGAGA AGAAGGGGTT GACTCTTGGA GTTGTTCTTC 
    TTCTGGTTGA GTCTGGACAA GAAAAAATGT TCAAAGTTAA GGTTGTGAAT 
    GCCCTTAGAT CTGCGGTGAG GAAGCCCAAG TCAACCTCTG TGAAGCTCCC 
    ATTTGGTCTT TGTGGCTGTG AAGAACAGAA TGCTGGTGTT GGAGAATTCG 
    GGGATGTTGA TGTGGAGTCC ATTGATCAAT GTTATAGACA TGAGTTGGAT 
    GATCTGAATA CTAGGATTCA GCTTCAAATG CCACCTCCAA GCTCTTCGTT 
    TTCTGTATCA GTAGATGAAT GGCAGACTAT CCAATCAGGT GGTGATGATA 
    TCAGAAAATG GCTACTGAAT TCAGATGATC TCGAGTTTAG TGGTCAGTTA 
    GGACCAAATT CATTTAAAGG AGTTTACAGA GGAACAAAGG TGGCCATTGA 
    GAAACTAAAA GGCTGTGAGA AGGGGAATTC CTATGAGTTT GCAATCCGAA 
    AAGATTTCTT GGAGCTGATG ACCTGTGGAC ACAAGAGCAT TTTGCAGTTT 
    TATGGTGTCT GCATCGATGA AAATCATGGA TTATGCGTGG TAACAAAGTT 
    GATGCAAGGT GGTTCACTTC GTGAACTGGT GTTGAAGAAA AAGAAGCTTC 
    AGACCAAGTT GATATTTCAA ATTGCTGTTG ACATAGCAGA AGGGATGAAA 
    TTCATTAATG ATCATGGTGT TGCATATAGA GACCTTAACA CACAGAGAAT 
    ACTATTAGAT AAGCAGTGCA ACGCTTGTTT GGGTGATTTG GGAATAGTCA 
    CTGCATGCAA GAGTGTCAAC GAGGCCATGG AGTATGAAAC GGATGGCTAT 
    CGATGGCTTG CACCCGAGAT AATCGCGGGA GACCCGGAGA AGACAAGAGA 
    GAGTTGGATG AGCAATGCGT ATAGCTTTGG GATGGTGCTT TGGGAGATGG 
    TGACAGGGGA GGAGGCATAT GGGTCTTGCT CACCAGTGCA GGCAGCGGTT 
    GGGATTGCAG CGTGCGGACT AAGACCAGAT ATCCCAAAGG AGTGTCCTCA 
    AGTCCTCAAA TATCTTATGA TCAAATGCTG GAACACTTGC CCTTCCACAC 
    GCCTTAACTT CTCTCAAATC CACTGCATCT TGCTCCGTGC CATTTCACGG 
    TAACACATTC TCTTCTACAT AGGAATTGGA AGAGTGCCTC TTTTTGAAGA 
    AATGTTTAGC AAACCAATAG TTTTTGTGGG TAACAGAATA GCTTCACATC 
    AATATAGCAA ATGTGATGAA GAAAGTGGTT GGTGTATATT TTGGTTAGAT 
    CAGATGGTAG CAACCTTGTG GACCGGAAAG TAGAATAACA GTTTCATTAT 
    CAGTTATAAG CCTCTTTGCC CAGTCCACTT TCATTTTTAC ACTTTGTTTA 
    CATTGTAAAT GGACCAATAT GAGTGATTTT TTTTCTTTTC TTTTTCTATA 
    AGAAAAAACA GGTACGAATG TTCGATTTCA TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT5G07140.1 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR23257:SF25 0
    HMMPanther PTHR23257 0
    Gene3D G3DSA:3.30.200.20 1.49999977583351e-06
    Gene3D G3DSA:1.10.510.10 2.500009099162e-35
    superfamily Protein kinase-like domain 2.2e-48
    HMMPfam Serine-threonine/tyrosine-protein kinase 9.09999999999992e-38
    ProfileScan Protein kinase, catalytic domain 0

    See the detailed result >

    AT5G07140.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT5G58520.1); Has 63076 Blast hits to 62625 proteins in 2279 species: Archae - 41; Bacteria - 4545; Metazoa - 25060; Fungi - 4515; Plants - 20509; Viruses - 254; Other Eukaryotes - 8152 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR