F27536

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27536

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F27536

Determination of introduced cDNA(s)

  • RAFL05-15-P08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-15-P08 - Resource: pda02658

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-15-P08 - full reading 
    GACGGTGCGA CAAGATGGCG AGCTCAGTGA CGCTGCTTCT ATGGAGTCTT 
    CTTCTTCTCG GTACACTAAG CGCTATTCAG GCCAAAAAGT CTAAGGAAAA 
    CTTAAAGGAG ATCACACACA AGGTTTATTT TGATGTTGAA ATTGATGGGA 
    AAGCAGCTGG TCGTATTGTC ATGGGTCTAT TTGGCAAGAC AGTCCCCAAA 
    ACTGTAGAGA ATTTCCGAGC TTTATGCACT GGGGAGAAAG GAATAGGTAA 
    GAATGGGAAG GCGCTCCATT ACAAGGGGAG TTCATTTCAT AGGATCATAC 
    CAAGCTTTAT GCTCCAAGGA GGCGATTTTA CACATGGAAA TGGAATGGGA 
    GGAGAATCTA TCTATGGTGA GAAGTTTGCT GATGAGAACT TCAAACTCAA 
    GCATACTGGT CCAGGGTTCT TATCAATGGC AAATGCCGGT CAAGATACCA 
    ACGGATCACA GTTTTTCATC ACAACTGTAA CAACCAGCTG GTTGGATGGG 
    CGACATGTGG TATTCGGGAA GGTAGTGACA GGAATGGATG TGGTGTACAA 
    AGTCGAAGCT GAAGGAAATC AGAGTGGAAC TCCTAAGAGT AAAGTGGTGA 
    TTGTAGACAG TGGTGAGCTT CCCCTGTAAC TCAACAACTC TAGTTTTCTC 
    CATCTGATCA TCCATTGATG TGAGCTCTAG TGTGCTTGAT GACTTTTGTG 
    TTAAAACGAG TGTCTTGGTT ACTTTATGAA AGATTCTACC GGCTTTATTT 
    CTTTCGTCTG CTTTCTAGCT CGAGCTATGT CTGACTTTAT ACACAAATGT 
    CTTTCAGTAG CAAAAATTCT GCACTTATGC CG

    Gene models with high sequence identity

    1. AT5G58710.1 [+] show detail - rotamase CYP 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 44.793
    HMMPfam Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 1.9e-45
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
    FPrintScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 6.6e-39
    HMMPanther CYCLOPHILIN 2.9e-113
    HMMPanther CYCLOPHILIN 2.9e-113
    PatternScan Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site 0
    superfamily Cyclophilin-like 1.4e-70
    Gene3D Peptidyl-prolyl cis-trans isomerase, cyclophilin-type 3.2e-64

    See the detailed result >

    AT5G58710.1

    Model type
    Protein coding
    Short Description
    rotamase CYP 7
    Curator Summary
    Encodes cyclophilin ROC7.
    Computational Description
    rotamase CYP 7 (ROC7); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, root development; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 5 (TAIR:AT2G29960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR