F27623

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27623

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F27623

Determination of introduced cDNA(s)

  • RAFL05-16-G20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-16-G20 - Resource: pda02683

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-16-G20 - full reading 
    GAGATGTCAT CTTCTGAAAC AGGGGAAGTT GCAGAGAATC TAGCGAGACC 
    AATGGCTACT CTGGTCTCGT CTCAAACTTA CATCTACCAT TGTCATATTA 
    GTAAACAAGC TCTTTATCAG GCAAAAGAAT CATACTCTCA TCGTAGAATT 
    TCCCGTCATA ATCACAGAGA AAGACTCGAT TTTTCTCATA GAAACCATAG 
    ATTGACAATA ACTAGAAAGC AGCAACCTTT GTCTTTCAAC ACCGTGTGTT 
    TTGCCGCAGA CGAGCCCTCC GAAATCAGTG CTGATGCTAG AATCCGTAGT 
    GAGGTTCTGT CTCCGTTCAG ATCAGTCCGT ATGTTCTTCT ACCTCGCCTT 
    TATAGCAAGC GGTTCATTAG GAGAACTAAT AGCCACTTCT AGGCTCATAG 
    GTACCCTGGC GAATCCGGCT AGATCAGGTG AAGTTCTTGA GATCGTTAAG 
    GGTTTGGGAG TTGACATTGG TGCTGCTTCT CTCTTTGCGT TCCTATACTT 
    CAACGAAAAC AAGACCAAGA ACGCGCAAAT GGCTAGGCTC TCGAGGGAAG 
    AGAATCTTGG CAAACTCAAA ATGAGAGTCG AAGAGAACAA TAAGGTAATC 
    TCCGTAGGTG ATCTGAGAGG GGTTGCTAGG CTTGTGATCT GTGCTGGTCC 
    TGCGGAGTTT ATTGAAGAAG CGTTTAAGAG AAGTAAAGAG TATACACAAG 
    GGCTCGTGGA GAGAGGTGTG GTTGTGGTGG CTTATGCTAC GGATGGGAAT 
    TCACCGGTTT TGGAGTTTGA TGAAACTGAC ATTGCGGATG AAGAAATGAG 
    CCAGAGAAGG AAGAAACTGT GGCGGGTGAC TCCGGTTTTT GTCCCGGAAT 
    GGGAAAAGTG GTTAAATGAG CAGAAGAAGC TTGCCAATGT TTCCTCAGAC 
    TCTCCAGTGT ATTTGTCTCT GCGTTTGGAT GGGCGTGTAA GGGCAAGTGG 
    AGTGGGTTAT CCTCCATGGC AAGCCTTCGT TGCACAGCTT CCTCCGGTTA 
    AGGGAATGTG GACCGGTCTT CTTGACGGTA TGGATGGTAG AGTGTAAATA 
    CTCTAATACT TAGGGATAAA GTCATATGTT TTTTAGTCTC CTATAAATTT 
    TATAAAATGT ATAGTTATGA AAAGATTTTG ACTTCAAAAT TATTATTTCC

    Gene models with high sequence identity

    1. AT4G28740.1 [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: ch...
      E-value: 0; Score: 99.83

     

    InterPro Scan Digest

    See the detailed result >

    AT4G28740.1

    Model type
    Protein coding
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR