F27624

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F27624

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F27624

Determination of introduced cDNA(s)

  • RAFL06-79-F01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-79-F01 - Resource: pda17238

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-79-F01 - full reading 
    GAACATCCAT AACAATGGCT TCCAAATCCA CCGTCACAAC ATTGACCATC 
    TTCTTCTTCT TCTTCTTCTT CTTCATCGAG CCTAAGGTTC AGTCTCAGCA 
    AATCTCAGCC GTTGATTCAG AATGCACCAA CCGTTGGATT CACATCCGAA 
    CACTCCCATC ACGATTCAAT CTCGATCTTC TCTCAACTTG TAATCGTTAC 
    CCAATCACCG ACGATCTTTG CCCTTACTTA GCCAATCACG GACTCGGCCC 
    AAAAACCCAT ACCCGTACCC GAAGCTGGTA TCGAACCGAC CCGTTACTTC 
    TCGAACTCAT TTTCCACCGT CGGATTCTCG AATATCCATG TCTCACACCC 
    GACCCGAATC TCGCCTCCGC AATCTACCTC CCTTACTACG CCGGCATCGA 
    TTCTCTCCGT TATCTCTACG GACCCGATTT AAACTCAAGC GCTGATCACG 
    GGTCGGATCT TCTCGAGTTT TTGACCCGTG ATCAACCCGA GATCTGGTCT 
    CGTCGCTCCG GTCATGATCA TTTCCTCGTT ATGGCTCGAC CCGCTTGGGA 
    TTTCTCTCAG CCGTTGACCG TTGACCCTCC GATTTGGGGA ACGTCGTTTC 
    TAGAACGCCG TGAGTTTTTC AATCTAACGG CGTTAACTCT CGAATCTCGT 
    TACTGGCCGT GGCAAGAACA AGCCGTTCCT TATCCGACGT CGTTTCATCC 
    ACACAGCTTG CCGTTTTTGG AATCGTGGAT CCGTCGTGTC CGTCGCTCAC 
    GGCGAACTTC TCTTATGCTA TTCGCCGGCG GTGGTGGTAC CTCCTCTTCT 
    CCTAACATCC GTCGTAGTAT CCGCTTAGAG TGCACTAGCA TAAACGCAAC 
    ACAATCGGAT AATAAAATCT GCGATTTCGT CGATTGTTCT AACGGAATCT 
    GTGAGCATGA TCCGATTAGA TTCATGAGAC CGATGTTACA ATCATCGTTT 
    TGTTTACAAC CACCGGGAGA TACACCAACA AGGAAAGCTA CATTCGACGG 
    AATCATCGCC GGATGTATAC CGGTGTTTTT CGAGGATCAA ACGGCGAAAA 
    TGCAGTACAA ATGGCATTTA CCGGAGTCCG AATTCGCGGA GTTTTCGGTT 
    ACGATTCCGA AGGAAGATGT AGTGTTTAGA GGAGTTAGAA TACAAGATGT 
    GTTGATGAGT ATACCTAAAG AAGAAGTTAC TAGAATGAGA GAAAGAGTTA 
    TAGAGATGAT GCCTAGAGTT ATGTATAGAA GACATGGAGC TTCAATGGGA 
    TTGATGAATA AGAAAGATGC TGTTGATATT GCTATTGATG GAGTTTTGGA 
    CAGGATTATA TCTAGAGTTT GATTCTTACT AACAACAGTT TTAAACAGGT 
    ATGTATTATG TTGTTGTTTG TTTAAATTGT TATACTTCAA AATTCATTTT 
    TGATTGTTCA TGTTTGCCAA ATCTCATTGA GATTTTTTGG TTAGTAATAT 
    ACTACTATAG TGGTTACATT AATAATGAAT GTTAAGGTTT AGGTGAGATT 
    TGTGTAATGA TATGGTTATT TGTATCATTG TAAGTCATGG TAATGATTAG 
    TGATTATTGT AATGTTTTTG CTTGTCTACA AAAAAAA

    Gene models with high sequence identity

    1. AT4G22580.1 [+] show detail - Exostosin family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther EXOSTOSIN (HEPARAN SULFATE GLYCOSYLTRANSFERAS 5e-15
    HMMPfam Exostosin-like 5.3e-64

    See the detailed result >

    AT4G22580.1

    Model type
    Protein coding
    Short Description
    Exostosin family protein
    Computational Description
    Exostosin family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exostosin-like (InterPro:IPR004263); BEST Arabidopsis thaliana protein match is: Exostosin family protein (TAIR:AT4G13990.1); Has 709 Blast hits to 706 proteins in 36 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 670; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR